RNA id: XM_021624935.2


Basic Information

Item Value
RNA id XM_021624935.2
length 6976
RNA type mRNA
GC content 0.55
exon number 48
gene id LOC110538240
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71989879 ~ 72010860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTTACCATTGCACGGGCGGGACTTCCGTTCGAGACGCGGGAACTTCCGTTCGGGAATACAACATGGAATACATGATTTGGCAGTGAGTGTACACAATGAATCGTCCCAAGCCTACAACGATCAGGCGGCCTAGTGCAGCAAAGCCCTCAGGGCACCCTCCTCCTGGAGATTTCATAGCATTGGGGTCAAAGAGTGGCGGAGAGTCCAAAGCACCTGCAGTTCTCCTTAAGCCAGCGTCCACCTTACCCACTGACCGTAAACGAGAGACTTCCTCGTcacttccatcctcctctggcctATCCGGCCTCGTGAAGCGCCCCAAgatctcctctacccctcctgtCAGCGCCCTAGGACGACTGGCTGATGTGGCAGCAGTGGACAAAAGGGCTATATCGCCTTCGATCAAGGAGCCCTCAGTGGTGCCCATAGAAGTCCCCCCAGCAGTGCTCCTGGATGAGATTGAGAATGCAGAGCAGGATGGAAATGATGATCGCATTGAAGGGGTGCTCTGTGGAGCTGTCAAACAGCTGAAGATGAACCGGGCTAAACCTGACATAACACTATACCTCAGCCTCATGttcctggccaagattaagcccAATCTCTTCGCCACTGAAGGCATTATTGAGGCCTTGTGTAGTCTCCTTCGCCGGGATGCCTCCATCAACTTCAAAGCAAAGGGCAACAGTCTGGTGTCTGTGCTAGCCTGCAACCTGCTGATGGCAGCCTATGAGGAGGATGAGAACTGGCCAGAGATCTTTGTCAAAGTGTACATTGAGGACTCTTTAGGGGAGCGAATTTGGGTAGACAGTTCCCATTGTAAGAATTTTGTGGACAATATCCAGACTGCCTTCAGTACCAAAATGCCCCCAAAGAGTATGCTGCTGCAGTTGCAGACTGACACTGGCCGCTCCGGTGGAGATATCAGTGCAGGGAGCAGTCCTCACCCCTCCACCCCAGATGAGGATGACAGCCAGACTGAATTGCTGATTGCTGAGGAGAAACTTAGTCCTGAAGATGATGGACAAGTTATGCCAAGGTACGAGGAGCTGTCTGAGAGTGTGGAGGACTATGTTCTAGATGTCCTGAAGGACCAGTTGAACCGCAGGCAGCCCATGGACAATGTGTCCCGTAACCTGCTGCGTCTGCTCACTGCCACCTGTGGCTACAAGGAGGTGCGGCTTATGGCTGTGCAGAGGCTAGAGATGTGGCTGCAGAATccaaagCTGACCCGTCCAGCTCAGGACCTTCTCATGTCTCTCTGTATGAACTGCAACTCCCATGGAGCGGACGACATGGAGGTGATCTCCAACCTCATCAAGATCCGTCTGAAACCTAAAGTCATCCTCAATCACTACATGCTCTGTGTCAGGGAGCTACTGAATGCACACAAAGACAACCTGGGAACTATGGTGAAGCTGGTGATCTTCAACGAGCTGTCCAATGCCAGGAACCCCAACAACATGCAAGTCCTTCACACACTGCTCCAGCACAGCCCAGAGCAGGCCCCTAAGTTCCTGGCCATGGTGTTCCAGGACCTGCTGACCAATAAGGATGATTACCTGCGTGCCTCTCGAGCCTTGCTGAGAGAGATCATCAAACAGACCAAGCACGAGATCAACTTCCAGTCCTTCTGCCTGGGTCTGATGCAGGAAAGGAAGGAGGCCACCTACGTCGACATGGAGTTCAAAGAACGCTTTGTGATCCAGGTGACAGACCTGCTCACGTGCTCCATGATGCTGGGCATCACAGCTCAGGTCAAGGAGGCTGGCGTTGCGTGGgacaaaggagagaagaagaATCTGGATGGTCTGAGATCCTTTCAGAATAATATCGCTGCCATTCAGAGGGATGCTGTGTGGTGGCTTCACACTGTTGTTCCCACTATTGCCAAAGTGCCATCCAAGGACTACATACACTGTCTTCACAAGGTGCTTTTCACAGAGCAACCAGAGACCTACTACAAGTGGGATAACTGGCCCCCTGAGAGCGACAGAAATTTCTTCCTGCGGCTGTGCTCTGAAGTGCCACTGCTGGAGGACACTCTGATGCGTATCCTGGTCATCGGACTGTCCCGTGACCTGCCCCTGGGCCCGGCCGACGCCATGGAGCTGGCGGACCACCTGGTGAAGAGGGCAGCCGGGGTCCAGTCTGATGGTACAACATCTGCAACAGCAATGGATCTGGATGTGTTGAGAGTGGAGCGGATCCAACTGATTGACGCAGTGCTGAACCTGTGCACCTACCACCACCCAGAGAACATTCAGCTTCCTGCGGGCTATACTCCTCCGAACCTGGCGATAGCCACACTCTACTGGAAAGCGTGGCTCCTGCTACTTGTGGTGGCCGCTTTCAATCCACAGCAAATAGGCTTGGCTGCCTGGGACGGCTATCCCACACTGAAAATGCTCATGGAGATGGTCATGACAAATAACTACTCCTATCCTCCGTGTACGGTGGCCGATGAGGAGACCAAGACCGAGATGATCAACAGGGAGCTGCAGGTGtcccagagagagaagcaggagaTCCTGGCCTTCGAGAGCCACCTGGCAGCTGCCTCCACCAAGCAGACCATCACAGAGAGCAACAGCCTGCTGCTGTCCCAGCTCACCAGTCTGGACCCACAGGGCCCCCCTCGCAAACCCCCACCCGCAGTCCAGGAGCAGGTGAAGAGCCTTAACCAGTCCCTTCGCCTGGGTCACCTCCTCTGTCGCTCTCGCAACCCTGACTTCCTGCTCAACATCATCCAGAGACAGGCCTCCTCTCAGTCAATGCCCTGGCTGGCTGACCTGGTGCAGTCCAGTGAGGGGTCCTTAGACGTGCTGCCTGTGCAGTGCCTGTGTGAATTCCTGCTTCACGATGCAGCAGATGACAACTTGCCCATCGAGGATgacgaggaaggagagagcaaaGAGCAGAGAGCCAAGAAAAGACAAAGGCAACAAAAGCAGCGGCAGCTCCTTGGACGGCTGCAGGATCTGCTGTTGGGTCCTAAAGCTGACGAACAGACCACGTGTGAGGTGTTGGACTACTTCCTGCGCCGCCTCAGCTCTTCTCAGGTGGCGTCAAGAGTCCTGGCTATGAAGGGTCTGTCTCTGGTGCTGACTGAGGGGGGTCtgaaggatggagaggagagggaccagCCCATGGAGGAGGACTCTAGAGATGCTGAGCTCCTGCCAGGATACGAGTGGCTCCTGCAGGACCTCCCCAAGCTGCCCCTGTTCGACAGCGTCCGGGGCATGACCTCCACAGCTCTGCAGCAGGCCATCCACATGGAGACAGACCCACAGACCATCAGCGCCTACCTCATCTACCTGTCCCAGCATGCACCAGTGGAGGAGCAGGCGTCTCACAATGACCTCGCTCTGGATGTGGCCCGTCTGATTGTCGAGCGCTCCACCATCATGAACAGCCTGTTCTCCAAGTACTCCTGCCGGCCCGAGTCAGACGCTGTGCTCTCAGCCCTCATCTCCATCTTCTCGAGCTACAtcaggaggatgaggaagaccAAGGAGGGAGAGGACCTCTACAGCTGGTCAGAATCTCAGGACCAGGTGTTTCTGCGTTGGACCACAGGGGAGACAGCCACCATGCACATTCTGGTGGTCCATGCCATGGTCATTCTCCTGACGCTCGGGCCACCCAAAGAGGAGAGTGACTTCTTCAACCTCCTGGACATCTGGTTCCCCGACAAGAAACCCCTCCCCACCGCCTTCCTGGTGGACACCTCCGAGGAGGCCCTGCTGCTACCTGATTGGTTGAAGCTGAGGATGATCCGGTCAGAGGTTTCACGATTGGTGGATGCAGCGCTGCAGGATCTGGAGCCCCAGCAGCTGCTGCTGTTTGTCCAGTCATTTGGCATCCCTGTGTCCAGTATGAGTAAGCTGCTGCAGTACCTGGACCAGGCTGTATCCCACGACTCACAGACACTGGAACAGAACATCATGGACAAGAACTACATGGCTCATCTGGTGGAGGTGCAGCATGAGCGAGGCGCCACAGGGGGGCACACTTTCCACGGGTTgctcagctcctctctccctcctcgcaGAGATAGTACTGAGGTGAACAGAGCCAAAGTTACTGTGGAAACTCCTAGTGGCTCCTTGAAGATGAGAGCCAATCAGATCCCAGTGATTGGGCCTGAGGATGACCTCACCGGCATGTTGCTTCAGATGTTCCCTCTGAAGGTGGACCACCGCAGGCCCAGCCCCCCTACCCGGCCCCTCTCCCTGGCCCTGCAGCAGGCTCTGGCCCAAGAGCTGGTGCGTGCCAGACAGGGGGGGCACCCCCAGCAGGATGGGGTGTCAGTGCGTCTCCTACAGGCCCTGGCTGCCCTGCTCAGCTCTGCCCACGCCGGGGCCCTCGTCATGGCCATGAACCGCAGCCACGCCCTGTCCTGCCCCATGCTGCGCCAGCTGCATCTCTACCAGCGGCTGGTGTTGCAGGACGtggccttctcctctctcttcttcaagGCTGTCATGGAGATGATGACATGGTTGGAGAACCCGGCCGTGGAGGCGGGGCCGCTGCGGGCCTTGCTCAAGTCCTTCGCTGGACAGTATTCCCAGAAGCACCGGCTCACTGATGTTCGTACAGGCTTCCTCCACCTGGCTGAGGCCCTGGCTTATCAGAGGGACTCCGAGGTGGCCGTGAGGGCTATAATCGCCACACTGAAGGCAGGGGAGAGATGTAATGCAGAGCCGGAACTGATAGGCAAAGTGTTACAGGGGCTAGTGGAGGGGAAGTCTCCATATTTGGAGGAACTGCTGGCCTTGCTAATGACTATTGGAACAGAGACGGGGACCGGCTCTACCACCGCAGGCCCTGTTGCCATGGTGATAGCGCTGCTTCTCCAGGAGACTGAAGAGCAAGCTGTGAAAATGGAGGTGGATACAAACAACAGCAGCTCCGAGGTGACAAAGACTGGGTCCAGCTCAGGGCTGCTTGTTGATTGGCTGGGACTTCTTGACCCTGAGGTCACATCTGTGTGTCCAGACCTTCAGCGTAAGCTGCTCTTTGCTCTCAACAAGGGTAAAGGAACTCCCTCCTACAGACCATACCTTTTGGCATTGCTGACCCATCAGTCCAACTGGACAACTCTTCATCAGTGCATCAGTGCTCTTCTCAGCAAGCAGCAAGACCAGCGACTGGACCCATCTTCTGCTCTGGACTTCCTGTGGGCCTGCAGTCACATCCCTCGTATCTGGCAGGGCCGGGACCAGAAGACCCCACAGaaaCAGACAGATACATTTGTCCTGCGTTTGAACCCGGAGGAGCTTATCAGTCTGGTGGACCTCATCATGTCAGAGTCTGAGCTCAACAGCCGCGGCGACTCCTCGCCCCCTGCCAACGCCCCCGACAAGGCCAAGAGCACCCTGGACCAAACCTCCTGCTCCCTCATCCAGTCACGGCTGCCCCTGCTCCACAGCTGTTGCCATGGCGACCTGGTGAGAGTGAAGAAAGTCTCGGAATACCTCATCAACTGCACAAAGAAATGGGGAGACAGTGTGATGAGTAAGCGGTGCCAGAACCTCCTGCTCCAGCTCTACCTGCACTTCCCAGAGGTCATCCAGCACGTGACCTTACCTGACGCCACCCTGAGCAGCGAGGGGGCTGCCGACGGCACCACATGCAAGCACGACGTCCTGGTTCACCGTCTGGTCACGTTGCTAGGCGATACGGGAGACACAAAGTCGGCTGAGAACCGGATGTCAGACGCTAACCTGGCCTGCAGGAAgctggctgtgtcccaccctgtcctcctcctcagACACTTGCCAATGATCGGAGCACTTCTCCACGGACGCATCCACCTCAACTTCCAGGAGTTCCGGAGCCAGAACCACCTGACATTCTTCAGCAACGTGCTGGCCATCCTGGAGCTGCTGCAGCCATTAGTGTTCCACAATGAACACCAGAGGGCGCTGCAGGACTGCCTGCTCTCCTTCATGAAGATCCTGCAGAACCTCAGGAGACCTCGTATGCATCCGTTGGCCGTCTTCAGTAAATATGTGCAGTTCATTCAGAAGTATATTACCCACGATGCAGCAACAGCCATTCCCTATCTACAGAAGCATTCCGATATCCTACAGGGGCTCTCGGCAGAGCACCCTGACGTGCTGCTCAAATCCCTGCTGGCTGGCCTCACCCTGCCTGTGAAGACTGGCTCCTCTGACAGCTCTGCAGAGGACAGAGATGATGAGTCGTCCTCTGGTTCCCTGCCCATGGTCAGTATCTCGGCCTCCGTTCCACTGACTGCAGCTGACATGACCAAGTACCTGAAGAAGATCTCCAGGGGAGAAGCCATCGAAGACGTGCTGGAAGTTCTGACCGAGGTGGAGGACAAGTCCAAGAGGAATCCTGAGATCATCCAGTACTTCACTaatgacctgcagagactGATGACTTCTACTGAGGAGTTGTGTCGTAACATGGCCTTCAGCCTGGCCCTACGCTGCATCCAGAACAACCCGTGcactGCAGCAGACTTCCTGCCCACCTTCATGTACTGTATGGGCAGCGGGAACTTTGACGTGGTGCAGACGGCGCTTAGGAACCTGCCAGAATACGTGCTGCTCTGTCAAGAGCATGCAGACATCTTACTCCACAAGGCCTTCTTGGTGGGGATCTATGGGCAGATTGACACCAGCTCTATGATCTCTGAGTCCATGAAGGTCCTGCACATGGAGGCAACAACATGAGGACCCGGAGGTACAAGTCCTTCTCCTCTGACGGGAGGAAGTGTCACCGTAACATTTTTGTACTGTAGATTTAGACTCGTGTCATACGCAACTGCTCTGTTCTTTTTATCCATTTGGTCATTTCATCAGGATTTATGGATTGATACGAACTGATTATTTGATTCAAAGGTAATATCGAAGTATTCAAAAGATGGTGATAATGactattgtaaaaaaataaataataataaagtcACTCGTGCTTGTTTTGCAGTGGTA

Function

GO: NA

KEGG:

id description
K13138 INTS1; integrator complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257753 lncRNA upstream 21753 71930185 ~ 71968126 (+) True G1106195
TU1257765 lncRNA upstream 42543 71945727 ~ 71947336 (+) True G1106205
TU1257703 lncRNA upstream 145156 71844369 ~ 71844723 (+) True G1106146
TU1257603 lncRNA upstream 295179 71694464 ~ 71694700 (+) True G1106049
TU1257537 lncRNA upstream 412572 71573714 ~ 71577307 (+) True G1105987
TU1257810 lncRNA downstream 5185 72016045 ~ 72016353 (+) False LOC110538241
TU1257811 lncRNA downstream 6465 72017325 ~ 72017542 (+) True G1106236
TU1259751 lncRNA downstream 37646 72048506 ~ 72048709 (+) True G1107977
TU1259768 lncRNA downstream 61531 72072391 ~ 72072747 (+) True G1107994
TU1259774 lncRNA downstream 70175 72081035 ~ 72081346 (+) True G1108000
XM_021624933.2 mRNA upstream 24223 71948230 ~ 71965656 (+) True tmem184a
XM_021624931.2 mRNA upstream 47075 71941515 ~ 71942804 (+) False psmg3
XM_021624932.2 mRNA upstream 47075 71941522 ~ 71942804 (+) False psmg3
XM_021624928.2 mRNA upstream 334153 71648593 ~ 71655726 (+) True mrm2
trnaa-ugc-57 mRNA upstream 346597 71643208 ~ 71643282 (+) True trnaa-ugc-57
XM_021624938.2 mRNA downstream 5403 72016263 ~ 72019145 (+) False LOC110538241
XR_002475706.2 mRNA downstream 11679 72022539 ~ 72036697 (+) False micall2a
XM_021624939.2 mRNA downstream 11680 72022540 ~ 72037884 (+) True micall2a
XM_021624943.2 mRNA downstream 114352 72125212 ~ 72130074 (+) False zfand2a
XM_036938299.1 mRNA downstream 114353 72125213 ~ 72130074 (+) False zfand2a
TU1257763 other upstream 47080 71941551 ~ 71942799 (+) True psmg3
TU1257166 other upstream 1083450 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 1083450 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 1083450 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 1355908 70612303 ~ 70633971 (+) True G1105467
TU1257805 other downstream 6733 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 1294565 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1373948 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 1822783 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 1835395 73846255 ~ 73846794 (+) True G1109786

Expression Profile