RNA id: XM_021624932.2



Basic Information


Item Value
RNA id XM_021624932.2
length 712
RNA type mRNA
GC content 0.40
exon number 3
gene id psmg3
representative False

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71941515 ~ 71942804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTTCATTCTTTAGTGGCAGTGCGCATGTGCGAAATTTAGAGAGGGACGCTTGAGAAACTGCAGACGATATCAATGCTTATAATTAACAGCCTTCAATAAAGGTTATTATTGAAGTTCATGGCAAACGGATCCAAACAGGCACACGAAAGAAAACCATGTCAACTCAGCCTCTCATCAGATCAAAGCAGACAGAGAAATCAATCAATGGAATATCCACACAGGTTGTTTGCACAGAATTCAGTAACTACATATTTATAGTTCTCACACAGTATGGAAAGATTGGCACTTTAGTATCAGTCACACCTGACTCCAGATCAGGTGATATCAGCACTCCCATGTTCACCACCAAAGTATTGTTGGGAAAAGAAGAGGCTTTGACACACGTCTGTGCGAAAAACTTGGCAACATTTGTGTCACAAGAGGCAGGCAACAGGCCTGTTCTACTGGGGTTGGCGCTGAAGGACAGTTCCATAGAAGCAATAAAGGCCATGAAAGATGTAATCAAAAGTTGTCAAGTCTGGTAACTACTGGTACAGGGAACGAGCAACAGAATAACCTACCTGGAAAGACAATTTCAGAAAAGGCTTCATACACTTAACTAATTTTTTCCTCAATGTTTTTGCATCCTTTAAAAACGTATTTTGTTATCTGTTGTTACGTCTAAGCTTGATGTGGAAATAAATGCCATATAAATGGGAAGTTTATGCATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1257703 lncRNA upstream 96799 71844369 ~ 71844723 (+) True G1106146
TU1257603 lncRNA upstream 246822 71694464 ~ 71694700 (+) True G1106049
TU1257537 lncRNA upstream 364215 71573714 ~ 71577307 (+) True G1105987
TU1257527 lncRNA upstream 382290 71558430 ~ 71559232 (+) True G1105982
TU1257525 lncRNA upstream 384426 71556873 ~ 71557096 (+) True G1105980
TU1257765 lncRNA downstream 2923 71945727 ~ 71947336 (+) True G1106205
TU1257810 lncRNA downstream 73241 72016045 ~ 72016353 (+) False LOC110538241
TU1257811 lncRNA downstream 74521 72017325 ~ 72017542 (+) True G1106236
TU1259751 lncRNA downstream 105702 72048506 ~ 72048709 (+) True G1107977
TU1259768 lncRNA downstream 129587 72072391 ~ 72072747 (+) True G1107994
XM_021624928.2 mRNA upstream 285796 71648593 ~ 71655726 (+) True mrm2
XM_036938294.1 mRNA upstream 295125 71631816 ~ 71646397 (+) True LOC110538233
XM_036938295.1 mRNA upstream 296820 71631595 ~ 71644702 (+) False LOC110538233
trnaa-ugc-57 mRNA upstream 298240 71643208 ~ 71643282 (+) True trnaa-ugc-57
XM_021624922.2 mRNA upstream 372742 71560690 ~ 71568780 (+) True lfng
XM_021624933.2 mRNA downstream 5426 71948230 ~ 71965656 (+) True tmem184a
XR_005035132.1 mRNA downstream 47075 71989879 ~ 72008243 (+) False LOC110538240
XM_021624936.2 mRNA downstream 47075 71989879 ~ 72010628 (+) False LOC110538240
XM_021624935.2 mRNA downstream 47075 71989879 ~ 72010860 (+) True LOC110538240
XM_021624938.2 mRNA downstream 73459 72016263 ~ 72019145 (+) False LOC110538241
TU1257166 other upstream 1035093 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 1035093 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 1035093 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 1307551 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 1570311 70370755 ~ 70371211 (+) True G1105393
TU1257805 other downstream 74789 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 1362621 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1442004 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 1890839 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 1903451 73846255 ~ 73846794 (+) True G1109786

Expression Profile