RNA id: TU1257537


Basic Information

Item Value
RNA id TU1257537
length 3573
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G1105987
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 71573714 ~ 71577307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTTAATTTCAAAACACAGTTCAAGCTCAATAAAACCACAGGTTCAACATGTACAATATTTTAGTAATTGCTTTAAAATAATATGAAAACAAATGAGTAAATCTACAGGGAAATGTTATCAAAACAAAGCAATGAAAGACTAATTATATCGTATTCACATTAAAGAAACAAACATTTTCTGCCTCCTACACATCGTAATATATGCAATGAACACTAAAAAGAATCAATGgtaaattacttttttttttgtatgaAGCAAAAAGAGATTTCATCACAATGACAAAGGAAATGTCAACTTCACCAGCTCATTTAGCAAACATGTTTTAAAGGGATATTGTCAATTAAGGCCCGTTATCTACTTCTCCAGAGTCAggtgaactcgtggataccatttttatgtctctgcgtgcagtttgaaggaagttgctaactagcgtcaGCGCATTTGCTAGTAGATACCACACACTTCCACTCATTCAGCTatcgctagttagcattggctcgcagaTCTAcctcatactggatgcagagacggTGGTCTATTAGACCATCAGAcgctggggaagtagataaagggcttaatagccaaaatcctgaagtatccctttaaagtcTGTACATTGGTCTAGCATTACAATATTAACAAAGAGAATATGACTACTCTAAAACGGTAAAAATGCATCCTTACTATAATAAATGGTCTTTCACACAGAGAATAAAAGAACAAGACATTTTCAGTTCAAAATGTAGGGCTCATTTTCTTAATTTGGTTGCTCAGGCAACCACAGTGCTGTGAACTGTACAAACAGGCCTACGTGAGACATTTAAAAAGATCCTTGTAAAGGTAAGGTGTTGTGTTTGGTTATTGGCACAGTCTGAAGAAAGAACCACACCTCTCATATTGATTACAATGCAGAACGAAGGGGCGCCAAGAGAAGCGTCAGTAGCAACAACGTACAACAATATTTCACTCTACGTTTGAAGGGGCACCATGCTTTAGGAGTCCACAGAGAAGTAGGATGCTCTTGCTGAAAAGGTAAATAGTACAAATGAACCCGTGTCACTACAGCATTTCTTCAATTTACCCATTGTGAAACAACTCCTGCAGTTTCATTATTTCTCTCCAAAATAGTTCTTTACGCCAAAACACATCTTTGTGACAATGAAATGCTGGCGCATTAGGATGTCCAGTTCTCTTGGCTGTTGTAACATGCATAATTGTACACTAGAATACATGTATTCTACCCCTCTTTAGAAGAAATGCATACTAATTCATGTACAGCCTCCAGACACTGGATGTAACATGATGTTACAGTCTGTGACTATATCCATAGGGTTCAGCAGAGGAGAACTGTGCGAGGCGGTCAGAGATCTGTTGGGAGGACAGGAGACTGGCAAGCAAACACACCGACCACTGTACGCAGAGGAACACCAACACAAGATACCTGGCTAACAGAAGACTACTGCAAATGATCTTTTAAACGAGTCTTATAATGGTGGAGGAAAACTCCTCTTTTGTTTGGTCTCTCAGCAACCTGGAACCAGTCCTCATATCTGTCTGTTGAAAAAAAAGCTTGTGCTTCCATTAGTTTCATAAGGTTTCCTTTCCTCGTCTGAATAGTCTTCCGTTTGAGAACAAAACCTTACCATAGAAGTGTGAACATTTTGTAATGAGAATTACAGTTCTGATAACAGTGGTCTGTGGTATTGATGAGAGGACAGCGGGTCCCACCGTTCACAGCTCTTCTTCTTTAGTGAGCTTCATCCGTCTTTTCAGTTCACACCATCCAAGAGCAGACGCTGGAATCGAAACAGCAAAACTCTCCAGTTCAAAATCCATGTAGCTTCAGTCATTTTCCAGGAATAGTGGCATACTGTATCACTCCAATGAAAAACCTCcctctgggggagggggggacaacagCCACAAACATGCAGGTCAGGACTAATGTAAGAGTTAAGAGATCCCAGTCTTTTCCAGTCATAGACCTACTACTATAAGACATGGTGAAATAAGATAACTGGTCCCACTCACAGTCCGTTTGTACAGACAAATGCAATAACAAGCTGATGGCTACGTAGATGAGTAATCAGTAGTCTCTCAGCTTGTTAGACAGTAGTAATGATATGTCAATGTGATCTCGTCAGACACAAGGATTGAGAGACCGGACAATACAACTGATGTTAATGCCCTTTCCTCGATCCGGCGTTCTACTGGTCGTGTTGCAAGTCCTCCAGATAACAGGATTACATGAGGAACTGAGATGTTTCACTATAATGAAGAACACTCACACAGAATGCTTGAGAAACACTGGTGTTTGTCGTTCAGACATATCAGGGCCATAGTATTGTTGAGGTACATCCAACCTTTGGAGGAACCGTGCATGGATCCCAACTTGCCATGACAGAGGCCTAGTTCTGTAAAAGGGTGTGAGGGAACAGCAGTTTCTAGGCCTTTCCACAGCTCTCTGTGTAAGGCATTGCTCAACATCTCCTCcagcaatgagagagagagtacagtacATAGCAACATATTGAACAAAATCACTATCAATAGTAATCAGTGCTAGATATTCCCATAACTGTCTCAGTCCTCACCAAAGCAATGGGGGTTTAGTTTCATTATCTCAGGTGTTCTCTCCTTCACAGCACCATAACCAGTGGTTTTTGCAGTGGTTAACACAGAGACCATTTGATTGTGGATATCTCCTTCATACAATATCAAATACAGGGAGACCCCAAAAGTGGCAGACAAATAAGACCAAAATATGTTGTTTGAGCAACATATCCTCATAAAGACATTATCACTCCGTTCAAGATGATATTTGGTGGACTgagcagaggaggaggaaaaggagcaGAGATAGTTTATGAAGAGCTGGAGGCCAGTTGCCTCATTAGTCTGTATTGTCCCTGGGCCACGAGGATGGCCCAGCACTGAGGCGAGGCGGTGGTAGCAGGGGAACAAGGGCCACCAACTCAGTCAGTCCACTAGCAGCCCATGGAACAGATGACAGCGATCCCACGATGCTGGAAATAACCTCCCACTGGCCCTCACCCTGCACTGGCTAGCTGCTCCGCTGTGGCCCAGCTCAGACTGGCCATCTGGAAACATCATGAAAGGGCCTACGGAAAACATTGTAATGACGACAGAACTATTTACATGATGCGTCTGCCTCGCGTTCCTTTCTTTGCTCTGCCATCAAGCACACTTCAAAAGACATATTTGGCTcagatgtttgaagttgttgCTGGGGGAGAGGGCTAGTAAGAGTGAAGAGGAAAGGAGATTGAGACTGTAGCCTGGATGAGGATGGCGATGACGTCACAGAGATGTTGAGGGGCATTGGAGAAGAAGTTCCAGAGGCTAGGTGGTTCCAGACTGGTGTGTCTGTTGGTGGGTCACGCCCTCGGTGTTGTCTAGAGCTGCGCCGCTGGGTGATGTGGTGGGCGGTGTGGAGTGTGCTGTCGTGAGTGGTGTGCAGAGTCGTGTTCTTGGTGCTGTGGAGGAACGGGGGTGGAGGTACTGGGACCCGGTCCGCTGTTGGCCAGGTACTTGGCCCTCATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257527 lncRNA upstream 14482 71558430 ~ 71559232 (+) True G1105982
TU1257525 lncRNA upstream 16618 71556873 ~ 71557096 (+) True G1105980
TU1257521 lncRNA upstream 23588 71549806 ~ 71550126 (+) True G1105976
TU1257488 lncRNA upstream 152299 71421211 ~ 71421415 (+) True G1105943
TU1257486 lncRNA upstream 164742 71408674 ~ 71408972 (+) True G1105941
TU1257603 lncRNA downstream 117157 71694464 ~ 71694700 (+) True G1106049
TU1257703 lncRNA downstream 267062 71844369 ~ 71844723 (+) True G1106146
TU1257753 lncRNA downstream 352878 71930185 ~ 71968126 (+) True G1106195
TU1257765 lncRNA downstream 368420 71945727 ~ 71947336 (+) True G1106205
TU1257810 lncRNA downstream 438738 72016045 ~ 72016353 (+) False LOC110538241
XM_021624922.2 mRNA upstream 4934 71560690 ~ 71568780 (+) True lfng
XM_021624921.2 mRNA upstream 58851 71511846 ~ 71514863 (+) True LOC110538230
XR_005035327.1 mRNA upstream 59201 71514430 ~ 71514513 (+) True LOC118937918
XR_005035324.1 mRNA upstream 60501 71513132 ~ 71513213 (+) True LOC118937915
XR_005035325.1 mRNA upstream 60951 71512680 ~ 71512763 (+) True LOC118937916
XM_036938295.1 mRNA downstream 54288 71631595 ~ 71644702 (+) False LOC110538233
XM_036938294.1 mRNA downstream 54509 71631816 ~ 71646397 (+) True LOC110538233
trnaa-ugc-57 mRNA downstream 65901 71643208 ~ 71643282 (+) True trnaa-ugc-57
XM_021624928.2 mRNA downstream 71286 71648593 ~ 71655726 (+) True mrm2
XM_021624931.2 mRNA downstream 364208 71941515 ~ 71942804 (+) False psmg3
TU1257166 other upstream 667285 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 667285 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 667285 70902905 ~ 70906429 (+) True G1105655
TU1256950 other upstream 939743 70612303 ~ 70633971 (+) True G1105467
TU1256863 other upstream 1202503 70370755 ~ 70371211 (+) True G1105393
TU1257763 other downstream 364244 71941551 ~ 71942799 (+) True psmg3
TU1257805 other downstream 440286 72017593 ~ 72018290 (+) True LOC110538241
TU1261422 other downstream 1728118 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1807501 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 2256336 73833643 ~ 73834606 (+) True G1109778

Expression Profile