RNA id: XR_002475706.2


Basic Information

Item Value
RNA id XR_002475706.2
length 2665
RNA type mRNA
GC content 0.51
exon number 19
gene id micall2a
representative False

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 72022539 ~ 72037884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGCCTCGCCCCCTTGCGTCACGCCAATATACTTTTTCATGAGGTATGCAATGGTAGCGTATCAGTCGCGAGCATCAGCTGATGATTGAACACTGAACAGTTTGAACTGGCTTTTCTTTCTTGGTAATCGGTATCTTGCTTTCtactacctgcactcacctgaaATAAGACATAACACCCACTGGTTGCATACTTCTCTTTGGTATATATTTTTTTCGGAAGTCATTTATTTGACAGGACGCGCTCCGGGAAGGATGGCTGCCATCAAGGCGCTTCAACAGTGGTGCAAACTTCAGTGCAATGGGTACCGAGATGTGGCTATCATCAACATGACAACTTCTTTTAGGGACGGGTTGGCGTTCTGTGCGCTTATCCATAAATACAGACCGGACCTAATAGACTACGACTCCTTGAATAAAGAGGATATTTTTGACAACAACAACTTGgctttcCGGGTTGCAGAGGACAAGCTGGGGATCGCTGCTCTGCTGGATGCAGAGGACATGGTGGCCCTGAGGATCCCAGACCGACTGAGCGTCCTCACCTACATCTCCCAGTACTACAACTACTTCCACGGGCGCAACCCTATTGGAGGGGTGGGTGCTGTGAAAAGACCAGCAGAGGGCTCCAAGGAGGAGCCACGTGGAAAGAAGAACCTCCCGGTGGTGGCCAAAACCATGGTGTATAAAATGGTCATAGAGAATTGTccacctccttcctctctcatGGTGAAAACCTCCCCCAAAGCAACCAGAGCTGCTGTTCAGaAGACAGATGTATTGGTGGAGAGCTCCAATAAGACGGGCACTCTCAGCAGTAAATGTGTTGTGTGCAAATGCCACGTTCATCTGGTCCAACGGCACTTCATCGATGGGAAGCTTTACCACAGGAGCTGCTTCAAGTGCAGTGAATGCTCCAACGTCCTCCTGGCTGGGGCCTATAAACCAGGGAAGGAGCCAGGTTGCTTCATCTGTAATGACCACCAGAACACCAAGAATGACTACAACAAGCCTCCCTCTGGGGTTGTCATCCAGACCGGATGCCCAAGTGCCAACGTTGAATTCAAAAGTGACACCAGCAGAGTCCAGTCTGTGTCCCGCCCCACCTCTGTGCCTTTGACTCCCATCAAGGGTGTCTTGAAGCCCGTGGAGACCACCACCCCAGCTCCCCAACCATGGACCAGCTCGGCCCAGAGAACCCAGGCAGCACGGCAGAGGTTCTTCCAGTCATCTTCCTCCACCCCAGAGGCCCCCTCCAGCAGCCAGAAGCCCTCGGTACTGCCGAGGGTGCCCCTGAGTCCTGAGGAAGAGAAGAACCGAGCCAGGGCCGTCATTACCAAGAAACTAGTTGAGGCGAACTGCAACAACAATAACACCAGATACTTTGTTATCCGACCAGCAGAAAGGAGGTTTGGAGATATGGTAAACTCAGATGACCTCCCCAGCTGGAATCAGGCTGAATGTGGGCCAGGCACAGCAGGACAACTCTTCACCAGCAATAAGGAATTGCTTAACACTGTCAACAAAGCCAGCGCCAGACCAACAACCGTATCCTCCACCATCAAAGTAAATGCAGACCGTGCAGAGGCTCCTGTTAACTGGCGATCAAAGCTCAAGCCTGTTAAAAATGGACCAGGACTGAAGACCTCTGACTCTGAGAACCAAGCGATCATTGTTGAGCAACCCAAACCTGAAGCCATCTTGAAGTCCTTTGCTACTAGTATCGTCGTCAACATCCACTCTACCTCTCCTCCGATTCCCCCACCTGCCTTCAACCCTCCTCCACCTGGCCCGGTGTCTCACAGAGCTCCGTCTCCCAAGCAGCCCCATTGCGGCTCTGGAGGCTTGGGTACTAAAGATGGTAATTATTCTACTCCTCTGTTGTCCACTCCTCCCCTGGTTCCTGTCTGGCACAGGGTTCCCACTCCAAATAAGCCTCACCACAGCTTTGCAGGATTGGgcTCAACGGATGGCAATTCTCCCCCTATATCTCCTAAACCGCTTCGCCAGAGCTCCACAGGCTCCAAAAATGGAAAGTATTTGTCACCCACAAACACCTCCCAGTCTGAAATGAGGTCACCCTCGTCCCATCACATCCCCATGGACCAGATAGTGAAGGAGCTGTGTGAGATTGGAGACATCCTGGGTGACTTGGAGAGGaagggagtggagatggagaagaGGCTTCGCAGCTGTGAGGAAGAGGGCAGGGGGGACATTTTGATGGACCCTCTGATGGTTGACTGGTTCAACCTGATCCAAAAGAAGCAGACATGCATTAGGAGGGAGTCAGAGCTTGTGTACATAGCTAAGACTCAAGACCTGGAGGAGCAGCAGCCTGGGGTGGAGGGTGAGCTGCGCAGACTGTTGGAGAAACCAGATCATCTGAAGTCGACAGAGGAGCGTCGGCGAGAGAGCAGTCTGATGGAGAGGCTGATGGAGATTGTGAACTGTAGAAACGCCATTGTAGAAGGACTGGATGAAGACAGGCTCAGgagactgcctgttacgcgaatgcagtaagcaaaGGGAAGATGAAGAGGATCAGCAGTTGAATGAAATGATGCAGACTCTTGGACTTAAAAAATCCAAAATCAAGAGGAAGTCCTTCAAAATGCTGTTCAGACGAAAAAGTAGTAAAAAGGTCGCCGTGTTTTGATTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1257811 lncRNA upstream 4997 72017325 ~ 72017542 (+) True G1106236
TU1257810 lncRNA upstream 6186 72016045 ~ 72016353 (+) False LOC110538241
TU1257753 lncRNA upstream 54413 71930185 ~ 71968126 (+) True G1106195
TU1257765 lncRNA upstream 75203 71945727 ~ 71947336 (+) True G1106205
TU1257703 lncRNA upstream 177816 71844369 ~ 71844723 (+) True G1106146
TU1259751 lncRNA downstream 11809 72048506 ~ 72048709 (+) True G1107977
TU1259768 lncRNA downstream 35694 72072391 ~ 72072747 (+) True G1107994
TU1259774 lncRNA downstream 44338 72081035 ~ 72081346 (+) True G1108000
TU1259775 lncRNA downstream 45096 72081793 ~ 72082010 (+) True G1108001
TU1259799 lncRNA downstream 71523 72108220 ~ 72108622 (+) True G1108025
XM_021624938.2 mRNA upstream 3394 72016263 ~ 72019145 (+) False LOC110538241
XM_021624935.2 mRNA upstream 11679 71989879 ~ 72010860 (+) True LOC110538240
XM_021624936.2 mRNA upstream 11911 71989879 ~ 72010628 (+) False LOC110538240
XR_005035132.1 mRNA upstream 14296 71989879 ~ 72008243 (+) False LOC110538240
XM_021624933.2 mRNA upstream 56883 71948230 ~ 71965656 (+) True tmem184a
XM_021624943.2 mRNA downstream 88515 72125212 ~ 72130074 (+) False zfand2a
XM_036938299.1 mRNA downstream 88516 72125213 ~ 72130074 (+) False zfand2a
XM_021624942.2 mRNA downstream 88517 72125214 ~ 72130074 (+) False zfand2a
XM_021624944.2 mRNA downstream 88518 72125215 ~ 72127357 (+) True zfand2a
XM_021624946.2 mRNA downstream 115469 72152166 ~ 72161329 (+) True LOC110538247
TU1257805 other upstream 4249 72017593 ~ 72018290 (+) True LOC110538241
TU1257763 other upstream 79740 71941551 ~ 71942799 (+) True psmg3
TU1257166 other upstream 1116110 70902905 ~ 70906429 (+) False G1105655
TU1257167 other upstream 1116110 70902905 ~ 70906429 (+) False G1105655
TU1257168 other upstream 1116110 70902905 ~ 70906429 (+) True G1105655
TU1261422 other downstream 1268728 73305425 ~ 73306154 (+) True G1109505
TU1261395 other downstream 1348111 73384808 ~ 73385867 (+) True LOC110538462
TU1261764 other downstream 1796946 73833643 ~ 73834606 (+) True G1109778
TU1261780 other downstream 1809558 73846255 ~ 73846794 (+) True G1109786
TU1263295 other downstream 2923569 74960266 ~ 75048356 (+) True G1111126

Expression Profile