XLOC_029900 (fbxo21)


Basic Information

Item Value
gene id XLOC_029900
gene name fbxo21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11812080 ~ 11836557 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058591
GGAGTAAACAGAAAAGATGGCGACGCCATACACGGGAGATCGAGTTTTAGGGACAAATGTGGTTACCTCAGGACGTTTCTCCAAGCAGCTGATCGATTTACCGGCGGAGATATTAGAGCATATACTGTGCTTCCCCGTTTTAAACCCTGTCGACATTTGCAACGTTTCCAGCACGTGCAAGAGGCTACATGACGTGTGCCATGGCAGGGGAAAGGTCTGGGCTCATCAGTACAAACTCAGtcaGATGGCCCAGACTGCAGAGATTTTACCGGCAGAATGAATCATACGATTGGCTGAAGGAATTCAAGACCCGGCACACAGTTGGTCAACAGATAAGAAGAACAGTAGAGTCCATTTCCAAAAGGTTCTTCACTGAAGTTGTAAGTGACTCTACGAGAAAGGAGAAAGATGCCACAGTTTTAAGATTATAAATCATTATGCATTTGCACAAGAATCACAGTCTTAATGCCGTTATCGTTACACAGGTGTGTTTGTAAGGTAAGTTGAATTTAATCT
>TCONS_00058592
AGAAAAGATGGCGACGCCATACACGGGAGATCGAGTTTTAGGGACAAATGTGGTTACCTCAGGACGTTTCTCCAAGCAGCTGATCGATTTACCGGCGGAGATATTAGAGCATATACTGTGCTTCCCCGTTTTAAACCCTGTCGACATTTGCAACGTTTCCAGCACGTGCAAGAGGCTACATGACGTGTGCCATGGCAGGGGAAAGGTCTGGGCTCATCAGTACAAACTCAGATGGCCCAGACTGCAGAGATTTTACCGGCAGAATGAATCATACGATTGGCTGAAGGAATTCAAGACCCGGCACACAGTTGGTCAACAGATAAGAAGAACAGTAGAGTCCATTTCCAAAAGGTTCTTCACTGAAGTTCCTTGCATCGGTCAGGTTCTTGGAGACAGTTTTGCAGAAATCGAGTCTCTCGGAGCCCCTGAACACTTCTGTGAGGACGAGCTGCTTGGCATCTTGAACTCGGATAAAAGGAAGAGTTTGACACTTAAGTACTATGCAAAGAAAATCCTGTACTTCTTCCGGCAGCAGAACATTTTAAGGAATTTGAAGGTTTTTCTTGAGCGACCACCTGAACAACAATCAGCTCTGGAGGGTGCTGTTTTGGTGGACCAGTATTGCAACCCTCTGACTGACGTCACTTTTGAGAGCATATCTGCACAGGTAGAAGAAATCACAGACAAGGTGAAGAAGTGTCTGCGAGCGCAGAACGCCGCACACCCAAGTCTACGAGCCGGTCAAGgTGAATGCTTCGTTCTGGAAGACTTTGAGTTTCAAAGGCAAGTCATCTGTGCCGTGAATGCTGTGCTGTATGAGCAGTTACAGTACAAGGGCAATGAGCGAGACTACTACAATCCACTCAACTCATACATACATCAGGTGCTGCTCCGCAGGACAGGCATTCCCATCAGCCTCTCAGTGCTCTACATGACTCTGGCCAGGAAATTAGGAGTCCCTCTGGAGCCCGTCAACTTCCCCAACCATTTCCTGCTGCGCTGGTGCCAAAATCAGAGGAGGTGTGGTGATATCTACGACTATATATACATTGATGCGTTTGGGAATGGGAAGCAGCTGGCTGCTAAAGAGTGTGAGATTCTGATCAAACACCAGGCGACAGCAGATTACTACAGCGCTATAAGTACCAGCGAGCTTCTGCTGCGGATGGTGGGAAATCTGCTGAATATCGGCATGAGAGGGGAAGGGAATGAGAAATCATATCAGCTCCTGCGGGACTCTCTGGATCTCTACCTCAGTATTAACCCTGATAACGTGCAGTATCTTCTGCTACAGGCCcgtctctatttccacctgggcaTCTGGCCAGAGAAAGTGTTGGATATTCTCCAGCACATCCAGGCTCTGGACCCGTCTCAGCATGGAGCGGTGGGGTATCTGGTGCAGCACACGCTCGAGCACATCCAGCATAAGCGACATCCAGTGGAGCCGGAGGTGAAAAGACGCAGCGCTCCTGAACACAGAGACGTTCAGTTCTCCACAGGCCTCATCATGAAGCATAAGAGGTCAGGCTACAACTGTGTTATCTATGGATGGGACCCTAAATGCACCATGAGTCAGGAGTGGATTAACACCATGAGGGTCCATCAACTGTCTAAAGGGGCTGATCAGCCGTTCTACAATGTCCTGGTACAGGACGGGACCTGCAGATATGCTGCACAAGAGAATCTGGAGCCTCACTCTGCGCCACTGGAAATCGCTCACCCTGAAATCGGCCGCTACTTCAACGAGTATTCTGAAACGCACTACATCTCAAATGAAGAGCTGCAAGCGCGATACCCAGAAGACATGTGTAAAACCAACAGGACAGTAGAGGAGCTT

Function

symbol description
fbxo21 Predicted to enable DNA binding activity. Orthologous to human FBXO21 (F-box protein 21).

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04970 Salivary secretion
ko04972 Pancreatic secretion
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100922-229 Predicted to enable DNA binding activity. Orthologous to human FBXO21 (F-box protein 21).

Ensembl:

ensembl_id ENSDARG00000076611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058591 False 516 lncRNA 0.44 2 11812080 11816479
TCONS_00058592 True 1840 mRNA 0.50 12 11812089 11836557

Neighbor

gene id symbol gene type direction distance location
XLOC_029899 NA coding upstream 84204 11727284 ~ 11727876 (+)
XLOC_029897 NA coding upstream 205374 11575239 ~ 11606706 (+)
XLOC_029898 NA coding upstream 228843 11582840 ~ 11583237 (+)
XLOC_029896 NA coding upstream 310916 11497765 ~ 11501164 (+)
XLOC_029895 zgc:112294 coding upstream 397432 11407535 ~ 11414648 (+)
XLOC_029901 tesca coding downstream 4348 11840905 ~ 11864424 (+)
XLOC_029902 CT583689.1 coding downstream 12820 11849377 ~ 11849491 (+)
XLOC_029903 CU571331.1 coding downstream 64000 11900557 ~ 11900674 (+)
XLOC_029904 NA coding downstream 73158 11909715 ~ 11915290 (+)
XLOC_029905 SPRING1 coding downstream 107235 11943792 ~ 11960218 (+)
XLOC_029893 NA non-coding upstream 847263 10963027 ~ 10964817 (+)
XLOC_029906 NA non-coding downstream 146029 11982586 ~ 11984884 (+)
XLOC_029907 NA non-coding downstream 188962 12025519 ~ 12025954 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01030798_00000124_00008360 FBXO21 coding CI01030798 null 124 ~ 8360 (+)