RNA id: TCONS_00058592


Basic Information

Item Value
RNA id TCONS_00058592
length 1840
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_029900
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11812080 ~ 11836557 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAAGATGGCGACGCCATACACGGGAGATCGAGTTTTAGGGACAAATGTGGTTACCTCAGGACGTTTCTCCAAGCAGCTGATCGATTTACCGGCGGAGATATTAGAGCATATACTGTGCTTCCCCGTTTTAAACCCTGTCGACATTTGCAACGTTTCCAGCACGTGCAAGAGGCTACATGACGTGTGCCATGGCAGGGGAAAGGTCTGGGCTCATCAGTACAAACTCAGATGGCCCAGACTGCAGAGATTTTACCGGCAGAATGAATCATACGATTGGCTGAAGGAATTCAAGACCCGGCACACAGTTGGTCAACAGATAAGAAGAACAGTAGAGTCCATTTCCAAAAGGTTCTTCACTGAAGTTCCTTGCATCGGTCAGGTTCTTGGAGACAGTTTTGCAGAAATCGAGTCTCTCGGAGCCCCTGAACACTTCTGTGAGGACGAGCTGCTTGGCATCTTGAACTCGGATAAAAGGAAGAGTTTGACACTTAAGTACTATGCAAAGAAAATCCTGTACTTCTTCCGGCAGCAGAACATTTTAAGGAATTTGAAGGTTTTTCTTGAGCGACCACCTGAACAACAATCAGCTCTGGAGGGTGCTGTTTTGGTGGACCAGTATTGCAACCCTCTGACTGACGTCACTTTTGAGAGCATATCTGCACAGGTAGAAGAAATCACAGACAAGGTGAAGAAGTGTCTGCGAGCGCAGAACGCCGCACACCCAAGTCTACGAGCCGGTCAAGgTGAATGCTTCGTTCTGGAAGACTTTGAGTTTCAAAGGCAAGTCATCTGTGCCGTGAATGCTGTGCTGTATGAGCAGTTACAGTACAAGGGCAATGAGCGAGACTACTACAATCCACTCAACTCATACATACATCAGGTGCTGCTCCGCAGGACAGGCATTCCCATCAGCCTCTCAGTGCTCTACATGACTCTGGCCAGGAAATTAGGAGTCCCTCTGGAGCCCGTCAACTTCCCCAACCATTTCCTGCTGCGCTGGTGCCAAAATCAGAGGAGGTGTGGTGATATCTACGACTATATATACATTGATGCGTTTGGGAATGGGAAGCAGCTGGCTGCTAAAGAGTGTGAGATTCTGATCAAACACCAGGCGACAGCAGATTACTACAGCGCTATAAGTACCAGCGAGCTTCTGCTGCGGATGGTGGGAAATCTGCTGAATATCGGCATGAGAGGGGAAGGGAATGAGAAATCATATCAGCTCCTGCGGGACTCTCTGGATCTCTACCTCAGTATTAACCCTGATAACGTGCAGTATCTTCTGCTACAGGCCcgtctctatttccacctgggcaTCTGGCCAGAGAAAGTGTTGGATATTCTCCAGCACATCCAGGCTCTGGACCCGTCTCAGCATGGAGCGGTGGGGTATCTGGTGCAGCACACGCTCGAGCACATCCAGCATAAGCGACATCCAGTGGAGCCGGAGGTGAAAAGACGCAGCGCTCCTGAACACAGAGACGTTCAGTTCTCCACAGGCCTCATCATGAAGCATAAGAGGTCAGGCTACAACTGTGTTATCTATGGATGGGACCCTAAATGCACCATGAGTCAGGAGTGGATTAACACCATGAGGGTCCATCAACTGTCTAAAGGGGCTGATCAGCCGTTCTACAATGTCCTGGTACAGGACGGGACCTGCAGATATGCTGCACAAGAGAATCTGGAGCCTCACTCTGCGCCACTGGAAATCGCTCACCCTGAAATCGGCCGCTACTTCAACGAGTATTCTGAAACGCACTACATCTCAAATGAAGAGCTGCAAGCGCGATACCCAGAAGACATGTGTAAAACCAACAGGACAGTAGAGGAGCTT

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0034440 lipid oxidation biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006635 fatty acid beta-oxidation biological_process
GO:0009056 catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019395 fatty acid oxidation biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04970 Salivary secretion
ko04972 Pancreatic secretion
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-100922-229 Predicted to enable DNA binding activity. Orthologous to human FBXO21 (F-box protein 21).

Ensembl:

ensembl_id ENSDART00000111359

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061659 lncRNA upstream 84213 11727284 ~ 11727876 (+) True XLOC_029899
TCONS_00061655 lncRNA upstream 205383 11575239 ~ 11606706 (+) False XLOC_029897
TCONS_00061657 lncRNA upstream 205383 11576248 ~ 11606706 (+) False XLOC_029897
TCONS_00061658 lncRNA upstream 205383 11576442 ~ 11606706 (+) True XLOC_029897
TCONS_00061407 lncRNA upstream 228852 11582840 ~ 11583237 (+) True XLOC_029898
TCONS_00061660 lncRNA downstream 73158 11909715 ~ 11915290 (+) True XLOC_029904
TCONS_00061661 lncRNA downstream 146029 11982586 ~ 11984884 (+) True XLOC_029906
TCONS_00061408 lncRNA downstream 188962 12025519 ~ 12025954 (+) True XLOC_029907
TCONS_00058600 lncRNA downstream 692212 12528769 ~ 12537080 (+) False XLOC_029909
TCONS_00061662 lncRNA downstream 693845 12530402 ~ 12549604 (+) False XLOC_029909
TCONS_00058590 mRNA upstream 397441 11407535 ~ 11414648 (+) True XLOC_029895
TCONS_00058589 mRNA upstream 450496 11290851 ~ 11361593 (+) False XLOC_029894
TCONS_00058579 mRNA upstream 1718658 10084100 ~ 10093431 (+) True XLOC_029883
TCONS_00058577 mRNA upstream 1755748 10046643 ~ 10056341 (+) False XLOC_029882
TCONS_00058578 mRNA upstream 1755753 10046698 ~ 10056336 (+) True XLOC_029882
TCONS_00058593 mRNA downstream 4348 11840905 ~ 11864424 (+) True XLOC_029901
TCONS_00058596 mRNA downstream 107235 11943792 ~ 11960218 (+) False XLOC_029905
TCONS_00058597 mRNA downstream 107497 11944054 ~ 11953275 (+) True XLOC_029905
TCONS_00058598 mRNA downstream 678845 12515402 ~ 12517368 (+) True XLOC_029908
TCONS_00058599 mRNA downstream 692136 12528693 ~ 12549732 (+) False XLOC_029909
TCONS_00058587 other upstream 1062285 10747294 ~ 10749804 (+) False XLOC_029891
TCONS_00058588 other upstream 1062726 10747740 ~ 10749363 (+) True XLOC_029891
TCONS_00058586 other upstream 1090527 10719453 ~ 10721562 (+) False XLOC_029890
TCONS_00058585 other upstream 1090530 10719302 ~ 10721559 (+) False XLOC_029890
TCONS_00058584 other upstream 1299761 10511958 ~ 10512328 (+) True XLOC_029889
TCONS_00058594 other downstream 12820 11849377 ~ 11849491 (+) True XLOC_029902
TCONS_00058595 other downstream 64000 11900557 ~ 11900674 (+) True XLOC_029903
TCONS_00058601 other downstream 693845 12530402 ~ 12541704 (+) False XLOC_029909
TCONS_00058604 other downstream 774245 12610802 ~ 12610883 (+) True XLOC_029911
TCONS_00058611 other downstream 1090881 12927438 ~ 12927554 (+) True XLOC_029916

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01030798_00000124_00008360.mRNA True 1188 mRNA 0.47 9 CI01030798 124 ~ 8360 (+)