XLOC_029894 (SCARF2)


Basic Information

Item Value
gene id XLOC_029894
gene name SCARF2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11290851 ~ 11366499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058589
ATGGATCTAAAGTGCACTTTAGCGGCTGTAGTGCTTTTGCTTATATGCTTGTGTCCAGCTTTCAGTCAAGAACTCAATCCAAAGGGCAGAAACGTGTGCAGAGTTTCAGGGTCAGCAGGGTTTACATGTTGCAGTGGATGGGCACAGCAAGGCGATGAGTGTTTAACACCTCTCTGTGAAGGTAACTTCACGTGTAATGAAAACGAGGTTTGTGTCCGACCAAACGAATGTCGCTGCCGTCATGGATATTTTGGTGCAAGTTGTGACACAaAGTGTCCTCCTCAGTTCTGGGGTCCAGACTGTAAAGGCATGTGCACATGTCACCCTAACGGTAAATGTGACGATGTGACCGGGAAGTGCACATGCTACCCAAATCGCTGGGGCGAGAACTGCGAGCATCCCTGCACCTGCCAGAGAGGAAAGTGTGACCAGGAAACGGGCAAATGCACCTGCCATGTGGGTTTCTGGGGGCCGCAGTGCAACAACAACTGCTACTGCAGCATCAACTCAGTGTGTGACCAGAACACAGGCCGCTGCATCTGTAATCCCGGCTGGTTCGGGAGAAACTGCGGCGCTCAGTGTACGTGCAATAACTCACCCTGTGAGCAGTTCACAGGCCGCTGCCAGTGCCGAGAGAAGCTCTGGGGTCAGCGCTGCGAACGGCAGTGCCAGTGTGGGCATGGGAAGTGTAACCAGGCAGATGGATCATGCACTTGTAAACCCGGATACAGGGGGAAGCTGTGCCGTGAACCATGTCCAGCTGGACTGTATGGACAGAACTGCAGGAACAAATGTGGTCACTGTAAAGGTCAGCAGCCCTGTAAGTGTGTTTCTTTCATGTTTTTGTTCAGCTGCGAGGTTCGCTGTCCTAACGGCACATACGGAGAAAACTGTGAGAAAGACTGCAGTCACTGCTTTAACGGAGACTGTCATTTCGCCACAGGAGAGTGTCTGTGCGACCCAGGATTCTACGGGACATActgCAACCTGACCTGCGAGTTGGGCCATTTCGGAGTCAACTGTGCCCAGGACTGCCCATGTCACGACAAAAACTGCAACCCAGTATCCGGAGCCTATCCTAATCAGCGGATGGGAGTAATAGCTGCAGGAACGCTGGTCACATTCCTGCTGGTGGTTCTTCTGTCTCTGCTGTGCTGCTGCTTCCTCTGTAGCAACAAACACAACCGCAACAAGAAGGCCAAAATAATCCTCTGTGGTGGATTCAGTCGAATCAGCACCAAACTTCCCAGAATCCCACTGAGGAGACAGAAACTACCCAAAGTCGTCGTCACCCACCACGATCCTGAAAACACCTTCAACAGTATCATCGAGCCTCCATCTGTGGTGGACCAGCCTTCTCCGTCATGGTCATCCCAGGAATCTTTCTCTTCCTTCGAGAACAGCGAAGACGGGCCGGTTTACTGCGTACCCCATGAAGAGACTACAAACGAAAGTTGTGAAAAGCGCAGTTCTAGTGCCATTCCAGAAACATCATCGACACCTAATGAGGACGACGCAGGCGAGTACACATCCCTCAAAGAGACAAGAGAACCCACAAAAACATTTGTAAGCGATGGGACGGAGCAGCCTCTGCTCAAGTCTTCCGACAGTGAGTGCTCCACCAGCGGTTCTGAGTCCACCATCGCAGCCGTTTACGCCCATGTCGCCCGCCTTTCCAAACACTCCAAAGAGGACGACGACAGCGCCTCGCCAGAGAAGACCAAAGAAAAGACCAAACCTCGTCCTCCAGACCCTTCCACCAAACCAAAGGTGTCCTGGATCCACGGAACATCTGGAAACAACCCACCAGAGACTCCTTCAccacaaaaagaaaagaagaacagCTCTGAAGGTTCTGGAAAGGGTGACGAGAAGCAGAGATCGAAGGAGAGATCCAGCAAGAACCGGGAAAAGCATCAGGATAATAAAAAAGCAGACGAATCCCCTAGCAAAAGCATCTCTCACAAAGCTTCGGACACCATTGAGCATCTCAACGGAACATTCCAGAACGCCCTGAAGAAGATCGGAAACTTCCATTCAGATAAGAAAACTAATGACGCCAATAAAGATCCACCCAAGAGCCCGAAAATCATGCACCCTCACATGAACTCTGAGGCCGCCACGCTACTCGCGGCTCAGCTAAAAGAAAAAACCCAAAGCCTTAACCGAAATGAGGGTCTCACAGTGGGCATCAAACCCAACGGCATCTCAACACCTCAAGCCAACCGAGAGAAACCCACGCCACCTCAAAAAACCAAACGCTCCGCAACCGGGACCAACAAGCCCCTTCTTCCCACTTCCAGCAACCTCCAGAAGATGGTGGCTCCTATTTCAGACTCTACTCCTGAAGCCAAAAGCCCAGAAAAACAAGGGCTCAATGGGACCAGAGTTGAAGGAGATGCCACACCCAGGAAAACACCCATCAAAAAACCACCGAGGAAGAAAGGAAAGGAGGGAACGCCGGAGACGGAAGGCAAAACCACTCCAAAGACGGCCATTATGCCACCTCAGACTGTCAAATAG
>TCONS_00061406
AAGGTTttatcatgtttctttgattaaatacagattttcatttttgcatggTTCAAATGActcaattctgattttttctcccatgtggcacagatcggatatggcccatgtacgtgtaaacaagtaaaaaatcacatggattgcgatttactcaaatcagactGTAAGCAGGCAGATCAGAtattcacctgtcaatgcgagtcacgcgtcattaaaaaccatagcgaataaCTCAACTcttatgctttcattttagtgcaggcttcagcagagtcccaaaccctAAATCTCCTACACAaggactaaaaaagcttttatattgtcctatagcacaagtatttaagcatgttaatgagaGAGAGACAGTGCGCAACATCTGCCTTGTAACCAGTATAAACTAATATTTAACTGTGGCATCGTCACATGCCTAAATCATGGCATAAACATGACATTAAGaagcctactggtttaaaaaggcctagattaaaagaagacAGACAAATGAGAACTTTTTCtgtcaaactatagtaaaacaacttgtcaaaaagaaatttaaaaaaattaaaccctTTGACCAGATTAAaaacaggaatggagaaaagagtgctcttttattatcagctgtcagtcagcgcccgctctttttttttcctgctcattgtgcctttgccgtgtgctgtgtaaatacagacaatctgatacgagtcacttttaaaagattatgtgagcaggtcagcaaaaaaaaTTAGATgcagtcacaaaatcagaattgaccatcaagatctgcagtgtaaatgcagccttagagaCTGATCTGATAAGAAATAGCCTGAAATAGCTTTTGAATTGATTCTCAGTGTGTTTCTTTCATGTTTTTGTTCAGCTGCGAGGTTCGCTGTCCTAACGGCACATACGGAGAAAACTGTGAGAAAGACTGCAGTCACTGCTTTAACGGAGACTGTCATTTCGCCACAGGAGAGTGTCTGTGCGACCCAGGATTCTACGGGACATActgCAACCTGACCTGCGAGTTGGGCCATTTCGGAGTCAACTGTGCCCAGGACTGCCCATGTCACGACAAAAACTGCAACCCAGTATCCGGAGCCTGCAACTTATATCCTAATCAGCGGATGGGAGTAATAGCTGCAGGAACGCTGGTCACATTCCTGCTGGTGGTTCTTCTGTCTCTGCTGTGCTGCTGCTTCCTCTGTAGCAACAAACACAACCGCAACCCAGACCAGGAAAACTCCACCAACAGCAAGAAGGCCAAAATAATCCTCTGTGGTGGATTCAGTCGAATCAGCACCAAACTTCCCAGAATCCCACTGAGGAGACAGAAACTACCCAAAGTCGTCGTCACCCACCACGATCCTGAAAACACCTTCAACAGTATCATCGAGCCTCCATCTGTGGTGGACCAGCCTTCTCCGTCATGGTCATCCCAGGAATCTTTCTCTTCCTTCGAGAACAGCGAAGACGGGCCGGTTTACTGCGTACCCCATGAAGAGACTACAAACGAAAGTTGTGAAAAGCGCAGTTCTAGTGCCATTCCAGAAACATCATCGACACCTAATGAGGACGACGCAGGCGAGTACACATCCCTCAAAGAGACAAGAGAACCCACAAAAACATTTGTAAGCGATGGGACGGAGCAGCCTCTGCTCAAGTCTTCCGACAGTGAGTGCTCCACCAGCGGTTCTGAGTCCACCATCGCAGCCGTTTACGCCCATGTCGCCCGCCTTTCCAAACACTCCAAAGAGGACGACGACAGCGCCTCGCCAGAGAAGACCAAAGAAAAGACCAAACCTCGTCCTCCAGACCCTTCCACCAAACCAAAGGTGTCCTGGATCCACGGAACATCTGGAAACAACCCACCAGAGACTCCTTCAccacaaaaagaaaagaagaacagCTCTGAAGGTTCTGGAAAGGGTGACGAGAAGCAGAGATCGAAGGAGAGATCCAGCAAGAACCGGGAAAAGCATCAGGATAATAAAAAAGCAGACGAATCCCCTAGCAAAAGCATCTCTCACAAAGCTTCGGACACCATTGAGCATCTCAACGGAACATTCCAGAACGCCCTGAAGAAGATCGGAAACTTCCATTCAGATAAGAAAACTAATGACGCCAATAAAGATCCACCCAAGAGCCCGAAAATCATGCACCCTCACATGAACTCTGAGGCCGCCACGCTACTCGCGGCTCAGCTAAAAGAAAAAACCCAAAGCCTTAACCGAAATGAGGGTCTCACAGTGGGCATCAAACCCAACGGCATCTCAACACCTCAAGCCAACCGAGAGAAACCCACGCCACCTCAAAAAACCAAACGCTCCGCAACCGGGACCAACAAGCCCCTTCTTCCCACTTCCAGCAACCTCCAGAAGATGGTGGCTCCTATTTCAGACTCTACTCCTGAAGCCAAAAGCCCAGAAAAACAAGGGCTCAATGGGACCAGAGTTGAAGGAGATGCCACACCCAGGAAAACACCCATCAAAAAACCACCGAGGAAGAAAGGAAAGGAGGGAACGCCGGAGACGGAAGGCAAAACCACTCCAAAGACGGCCATTATGCCACCTCAGACTGTCAAATAGATCCATGTTTGGTGCGCTCATTTTTGAGAACGATTACAAACGTACACTTTCTCTATTCTTTTGTTTCAAACTATATAGGAATTGGATGgatttttggtttcttttataCGGATGAGCTGCTTTTAGGATTTAATATTTTGAAGGATCGCGGTTCTTGCTAACTCTTTGAAGTCCTGGAATCGGAAAAAACGTCAAGGCTTAAAAAAAGGAAGagtaaatgcatttaataagCTCATTTTTGTACGCTCTCAGTTTCACGTATGCATTACTCCACCAAATTTCCCAACGCTTCTTTATGCATTGTTTGATCAGCAGGTTTGTTTGTCTGAAAAGTTTGTATTTAGCACGGTATTCAGAGGTGTAAAGTATGAATCAAAGGTACTTTAAAGGTACAGGAGGAATGATGCAGATATTAAATCTCAGGCCATATTCACATGTATATTCAATATCTTTTAATAGATGTCATGAAGGAAATAGTTTGCTTTGTTTCAATGACACTTATGTTCATCAATGCTGCACCTAGCATCATGCTTTTTAAGCTTAAATTGACTCTTGCTAATCCACAGGGACATACATATATTTGCTGCTGAATTGAAACAGTAAAGCTTGATTTAATTGTTTCTATAAAGCACTCGGTAACACATTCGTTTTAGTCCTAATGAAGTATCAAATAGATTTGGTTGAAGGAAGTCCACCAAAGCCAGATGAATATGCACTTCTGTGATGCTGCATTTTTAGGGATGCACTGAATTTGTCGGTCACCAAAAACATCTGATAATTATTATCGATTGttatgacccacggcgcatgccttgCACGTAGcaatgcatttatacttctgtgtgctgtttgtgttgctctgcaataacacttccaaaacaatCTTAATCTTAGCCACTCGTAatgttttttggggggtgaagatttggtcacactttattttgatggtccgtttgttgaatttaagtcacattacatttacatgccaactaattctcaatagattataagtagactgttaggttggggttatggcttagtgtaagttgacatgtacttgcaaagtttcatatagtcagttaaatgtctgtttagcagcagtatcaacagatattaagcagacagtctagtaatactcaaatggaccatcaaaataaagtgttaccgaatttaGTGCAGAGCCCTGGGGATTGAAGAGAGGCTGGATTGACCAACAACCCTTACCCTCTAGATCCGAAGTTTGTTTTTCTAATGTTTTGATGCTATAAAAACAGTTTAGTAGAgctggtacactgaaaaaaaaaatattcagagatgattccttggatttactcaatttttttacgttaagtggttgtaaacaatttatttgtgttgaatttaaacaaacaaattaagttgaacattattaaactgaatttgtttgtttaaattcaacacaaataaattgtttgcaacagttctgcatgcaacacttttttcagtgtagtttttCAATATCGTGCCCCCTTTTTTGTGATAAACAGCACAGGCCCCAAACTACTTGTAACATTTTGGCTTCACTTTTTATTGACTTCCGAATTCGCAGCACTTCCATtggaaattattaaaaacaaaacattctctGGGATAAAAATGCTTTGGTGGATACAGGCCCCAAGTCAATTTCTGCTGGCATTCAGGCTGTCTATAAGCTATTATTAGttccaaaaatgtaaaatcagcacttaaataaataattcttcaGTAACTACCTTATATCTCAATCATTGAGCTTTCTTGCATATCTCACATGCTTATCTATACATGACCAAAGGTGCATAGTAACTTTGGCATTAGAAAGGAgcattttaggaaatatttgtttTACATAACTGCCATAGTtggcactacctgacaaaagtcttgtcgttgattccagttgcaagagcaacaaataataacttgacttctagttaatcatttggaaaagtggcagaaggttttttcagatgaatcatctattgaactgcatcccaatcctcacaaatactgcagaagatctattggaactcgcatggacccaagattctcacagaaatcagtaaaGTTTggttaaaggaaaaatcatggtttggggttatattcagtatgggggcgtgcgagagatctgcacagtggatggcaacatcaacagcctgagggatcaggacatttgtgctgcccattacattacaaaccacaggagaaagcaaattcttcagcaggatagcgctccttcacatacttcagcctccaaatcaaagttcaaagcaaagaaagtcaaggtgctccaggattggcatgcccagtcaccagaataaacattattgagcatgtctggggtaagatggaggctttgaagatgaatccaaaggatcttgatgaatgctgggagtcctgcaagaatgctttctttgccattctagatgactttattaatacatgATTTGAGTtcttgcagagatgtatggatagagtcctccaagctcatgtgagtcatacacaatattcattctttttccactgcaccatgactttatattctatactgttaattatttctgttaaatgacttttgtctaagcaaagtcagaccttactgtcctaattaaataattaaaatcaaggcatgatcatattttattttcctaaaataagcgtaatctaggggcctttgtctttcatataagccacttctgataccaaatgatcgactagaaggtcaagttattatgtgttgttcttaaaacttggataggcaacaagacttttgtcaggtagtgtaaatataTGTGGGACAAAGCTGAAAATTGTCATACATTTTTGACCATGTTTTACAGAATACACTCGCTGAATTTCCATACAGTGTAACAATAGTTAATATCCTTGGGGAAAAACCATATTAAAGAATCCAGTGCAGCCTCAGTACATGAATTAACTgtcatttgcatctttatactTTGCCACTATCATTTAAACCACTAGATGTTACACATTTgtcagaaaaaataaatgtttttagtaATTTAAACGTATAAAATTTCGTATGAgtgcttatatatttatatactgctTTATAACAAGTACAGGTAAGAATAAGTAATATgtcatttcatttttacattaatatatcaTTTACGCTGAATGACGATGGAACAGAACACATCTGTCACAAAAGATTTGCTTTAATTGCATGTAAAATGCTTTCTATGTGTATAActttacatttgttcatttcatTTTGATGCAGACACTAAAACTGGCCGTCTCATCTGTAGCTGTAGGCCTTACAAACATTATTTACCAAAGAAGCAATACTTAACCTGCCACAGATACAATCATAAGGCCTGAAAGACGGCAGCATTAATTCCTTAGATTTTATGTATACAATGACAGTtcataactacactgtaaaaaaataaatacaataaatgtttTCGTATAtattgttttccatttatttagagttgtgaattgcattatgagatctGGATCTCTGATGACTTTTGATGCTAAAAATTCAACCCTACagttgaacaaagtgacttttattgtcatgttagtagtttaaaacaacaaagatataatatgtagagaaataagtctgtaaaataacagaaaacgtACTGGGAGTTTATTACAAGGGTTTGTCGCGTAATATACACCAACCCatacaataaatcactttaaactattaaaaatgttaataaaagtcacttttttttttcaaactttaagGATAAAAAtgctggaagaaagatcaagatcccataatgcaataaataaatgggacaaaagaaataaaattaataaaaaatacagaaaactgctaatttatggatttattttttattttttttgcagtgtattaagTATTTTTGGTTTCGATCTGAAACACCCCAGAGCACTTGCAAATATTTTAGCATcaaaccaaaataataaaaaaataaataaaagaaagaaatgcaGTAATAGTTGACTAAAACGTGTATGAATGCCTACATTTTGATGAAGAGCTGCAAATTAAATGTGCCTaaagcatttatatatattttcttctcCACAAAATTTGACATTGTAGTGTACAGTAACTGCCATTTCCTTCTTATGGTACCTTCTATTTTTCTACATGCTAAgatattttgtaataatatttgtaCCTTCATCTGTAAGCTGTGCTTATACAACTTATATCCTGCTTTATTTGTGTGTGTCAAATGAACTGGTTTTCAAATTTGATTacattctttgttgttgttgttgttgtttgtataaACATCAGGTACGTTTGATTTTTATCATTGAAATATCCCTCAACGTCTTCACGTTTCTCTGTggatgttattgtttttttttaatgaacgatAAACTGCATGATGCAGAGGTCAGTGATTGGTTAAATATCTATGCATGTTGTGTTTGTTCGTACTGCCTTTCTTTACATACGACAAAAAAACTACTTTTCATGTTTTTTTGCACGAATTCACATTACCAGTCGCAGTATATGATTTACAGAAGTATAAACAACAGATTTTTCTCTGCTCTTGACTTCAGAGACATCTTTTGACTGGAGCTCGGCTATAAAAAAATATGGAGCATTATCAATAACACACATTAAGTCCATTTCTTTTGTCCTGATTGTTTGGAGTTTCTGTTGTTGATGTGTGGTTGTTCAGTTACCGTATTTGAAATAAAAGCAAACCTGTAGCTCATGAATCTAGAGAGTTAACATATTACATGGCTCTTCCTTCACTAGATCTGAACATTTGGATATGTTGTGTTTGACTTTTAATGAAGGGCTTTGGGATTTGGAGCAACATGAaagtaattttataatttttgggtgaactatccctttaaacacaatatagttaagaaatatttt

Function

symbol description
scarf2 Human ortholog(s) of this gene implicated in Van den Ende-Gupta syndrome. Orthologous to human SCARF2 (scavenger receptor class F member 2).

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-101117-2 Human ortholog(s) of this gene implicated in Van den Ende-Gupta syndrome. Orthologous to human SCARF2 (scavenger receptor class F member 2).

Ensembl:

ensembl_id ENSDARG00000114825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058589 False 2523 mRNA 0.51 11 11290851 11361593
TCONS_00061406 True 7497 lncRNA 0.38 6 11317169 11366499

Neighbor

gene id symbol gene type direction distance location
XLOC_029893 NA coding upstream 326034 10963027 ~ 10964817 (+)
XLOC_029892 NA coding upstream 506109 10761494 ~ 10784742 (+)
XLOC_029891 CR790366.1 coding upstream 541047 10747294 ~ 10749804 (+)
XLOC_029890 CR790366.2 coding upstream 569032 10719302 ~ 10721819 (+)
XLOC_029888 BX511089.4 coding upstream 690689 10379293 ~ 10600162 (+)
XLOC_029895 zgc:112294 coding downstream 41036 11407535 ~ 11414648 (+)
XLOC_029896 NA coding downstream 131266 11497765 ~ 11501164 (+)
XLOC_029897 NA coding downstream 208740 11575239 ~ 11606706 (+)
XLOC_029898 NA coding downstream 216341 11582840 ~ 11583237 (+)
XLOC_029899 NA coding downstream 360785 11727284 ~ 11727876 (+)
XLOC_029902 CT583689.1 non-coding downstream 482878 11849377 ~ 11849491 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G480454 NA non-coding CI01000338 null 1353849 ~ 1357298 (-)