XLOC_029890 (CR790366.2)


Basic Information

Item Value
gene id XLOC_029890
gene name CR790366.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10719302 ~ 10721819 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058585
AACCGAAACCCCCTTTGCGAGATTCGCTGCATCTATACCTGATTTGCGTTCAAAAATGCCTGCTTAATTATTTCATAGTAGGAGCAAACATGCCTTAAGAAAAGGAGTAGGTTTGAAACTTTAGTAACCATAAAAAGTCCGCCAGGTGGATGCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGACATCCTGATAGCAGCAATACAATTAAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtCCACAACTGactttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCT
>TCONS_00058586
GCCTTTCTACTCCAGGAAGCCGCAGCCTACGGCCTGAAGGAGGAAGAGGACGCGGTCAGTTTGAAATagctgaatcgATGACATCCTGATAGCAGCAATACAATTAAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtCCACAACTGactttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTT
>TCONS_00061651
CTGATAGCAGCAATACAATTAAGTGATGTATTACAGACAGAAGCCCATGTTTTGCTGTATCTCCACACAGCTGGGCCAGTTCTTCAGATGATCAGAGGGACTTCGCCATCATCACATCCCTCATTGCTGCAGTCAGACTGAAACAGGACGGTGATGCATGGCAGTCCATGCCCGAGATACGGATGATGAAGAGACCACAGCAACATCTGGTCCAGATGAGGACACAAGGGCATGTGGACTGATGCAGGGTCTCGTTCAGTTCACTACAGGAGAACAGGAGTGGCTAAACTCAGTCTAGAACTGCTGCTGTCTTGCAGAGTTTAGTTGAAGTTGactctaaactctgcaggacaccagctgtCCACAACTGactttgggcacccctgcattaCAGCATTTCCAAGATGCTGCTGCATGTGGACTTCTTTACCCTCACCACACACACCaatctgcagatatttcagatcaaacaaaacataaaaaacattcaaaaaacaaTGTCATTTTACTGTACAATGTGTCATTTGATTTCTGTAGTGCTAGTAATAAAATTATCCTACCTCTTATTTTGGATTCTTTTTTCCTCAAATGTGTTAGTTCCCTTGTCTACAGGTCCAGCTCTATCACAACAGCTCTgcagaaaaagcacacacacaacattaaTCAGAAAGCTGATGTAATCACTGTttgaaaatacaataactaataataataataaatagcaaatgtaaaatatgtttttttattttctgtactgTACTCAATAAAAGCCTCCATGTAACATAGAGACTAGAATAAATCACCTCTGTCATCAGGCCCGGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097106

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058585 False 781 processed_transcript 0.45 3 10719302 10721559
TCONS_00058586 False 603 processed_transcript 0.46 3 10719453 10721562
TCONS_00061651 True 822 lncRNA 0.41 2 10720167 10721819

Neighbor

gene id symbol gene type direction distance location
XLOC_029888 BX511089.4 coding upstream 119140 10379293 ~ 10600162 (+)
XLOC_029889 BX511089.1 coding upstream 206974 10511958 ~ 10512328 (+)
XLOC_029887 BX005024.2 coding upstream 382539 10336135 ~ 10336763 (+)
XLOC_029885 NA coding upstream 443749 10246859 ~ 10275553 (+)
XLOC_029886 BX005024.1 coding upstream 452612 10265648 ~ 10266690 (+)
XLOC_029891 CR790366.1 coding downstream 25475 10747294 ~ 10749804 (+)
XLOC_029892 NA coding downstream 39675 10761494 ~ 10784742 (+)
XLOC_029893 NA coding downstream 241208 10963027 ~ 10964817 (+)
XLOC_029894 SCARF2 coding downstream 569032 11290851 ~ 11366499 (+)
XLOC_029895 zgc:112294 coding downstream 685716 11407535 ~ 11414648 (+)
XLOC_029896 NA non-coding downstream 775946 11497765 ~ 11501164 (+)
XLOC_029897 NA non-coding downstream 853420 11575239 ~ 11606706 (+)

Expression


Co-expression Network