RNA id: TCONS_00058589


Basic Information

Item Value
RNA id TCONS_00058589
length 2523
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_029894
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 11290851 ~ 11366499 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATCTAAAGTGCACTTTAGCGGCTGTAGTGCTTTTGCTTATATGCTTGTGTCCAGCTTTCAGTCAAGAACTCAATCCAAAGGGCAGAAACGTGTGCAGAGTTTCAGGGTCAGCAGGGTTTACATGTTGCAGTGGATGGGCACAGCAAGGCGATGAGTGTTTAACACCTCTCTGTGAAGGTAACTTCACGTGTAATGAAAACGAGGTTTGTGTCCGACCAAACGAATGTCGCTGCCGTCATGGATATTTTGGTGCAAGTTGTGACACAaAGTGTCCTCCTCAGTTCTGGGGTCCAGACTGTAAAGGCATGTGCACATGTCACCCTAACGGTAAATGTGACGATGTGACCGGGAAGTGCACATGCTACCCAAATCGCTGGGGCGAGAACTGCGAGCATCCCTGCACCTGCCAGAGAGGAAAGTGTGACCAGGAAACGGGCAAATGCACCTGCCATGTGGGTTTCTGGGGGCCGCAGTGCAACAACAACTGCTACTGCAGCATCAACTCAGTGTGTGACCAGAACACAGGCCGCTGCATCTGTAATCCCGGCTGGTTCGGGAGAAACTGCGGCGCTCAGTGTACGTGCAATAACTCACCCTGTGAGCAGTTCACAGGCCGCTGCCAGTGCCGAGAGAAGCTCTGGGGTCAGCGCTGCGAACGGCAGTGCCAGTGTGGGCATGGGAAGTGTAACCAGGCAGATGGATCATGCACTTGTAAACCCGGATACAGGGGGAAGCTGTGCCGTGAACCATGTCCAGCTGGACTGTATGGACAGAACTGCAGGAACAAATGTGGTCACTGTAAAGGTCAGCAGCCCTGTAAGTGTGTTTCTTTCATGTTTTTGTTCAGCTGCGAGGTTCGCTGTCCTAACGGCACATACGGAGAAAACTGTGAGAAAGACTGCAGTCACTGCTTTAACGGAGACTGTCATTTCGCCACAGGAGAGTGTCTGTGCGACCCAGGATTCTACGGGACATActgCAACCTGACCTGCGAGTTGGGCCATTTCGGAGTCAACTGTGCCCAGGACTGCCCATGTCACGACAAAAACTGCAACCCAGTATCCGGAGCCTATCCTAATCAGCGGATGGGAGTAATAGCTGCAGGAACGCTGGTCACATTCCTGCTGGTGGTTCTTCTGTCTCTGCTGTGCTGCTGCTTCCTCTGTAGCAACAAACACAACCGCAACAAGAAGGCCAAAATAATCCTCTGTGGTGGATTCAGTCGAATCAGCACCAAACTTCCCAGAATCCCACTGAGGAGACAGAAACTACCCAAAGTCGTCGTCACCCACCACGATCCTGAAAACACCTTCAACAGTATCATCGAGCCTCCATCTGTGGTGGACCAGCCTTCTCCGTCATGGTCATCCCAGGAATCTTTCTCTTCCTTCGAGAACAGCGAAGACGGGCCGGTTTACTGCGTACCCCATGAAGAGACTACAAACGAAAGTTGTGAAAAGCGCAGTTCTAGTGCCATTCCAGAAACATCATCGACACCTAATGAGGACGACGCAGGCGAGTACACATCCCTCAAAGAGACAAGAGAACCCACAAAAACATTTGTAAGCGATGGGACGGAGCAGCCTCTGCTCAAGTCTTCCGACAGTGAGTGCTCCACCAGCGGTTCTGAGTCCACCATCGCAGCCGTTTACGCCCATGTCGCCCGCCTTTCCAAACACTCCAAAGAGGACGACGACAGCGCCTCGCCAGAGAAGACCAAAGAAAAGACCAAACCTCGTCCTCCAGACCCTTCCACCAAACCAAAGGTGTCCTGGATCCACGGAACATCTGGAAACAACCCACCAGAGACTCCTTCAccacaaaaagaaaagaagaacagCTCTGAAGGTTCTGGAAAGGGTGACGAGAAGCAGAGATCGAAGGAGAGATCCAGCAAGAACCGGGAAAAGCATCAGGATAATAAAAAAGCAGACGAATCCCCTAGCAAAAGCATCTCTCACAAAGCTTCGGACACCATTGAGCATCTCAACGGAACATTCCAGAACGCCCTGAAGAAGATCGGAAACTTCCATTCAGATAAGAAAACTAATGACGCCAATAAAGATCCACCCAAGAGCCCGAAAATCATGCACCCTCACATGAACTCTGAGGCCGCCACGCTACTCGCGGCTCAGCTAAAAGAAAAAACCCAAAGCCTTAACCGAAATGAGGGTCTCACAGTGGGCATCAAACCCAACGGCATCTCAACACCTCAAGCCAACCGAGAGAAACCCACGCCACCTCAAAAAACCAAACGCTCCGCAACCGGGACCAACAAGCCCCTTCTTCCCACTTCCAGCAACCTCCAGAAGATGGTGGCTCCTATTTCAGACTCTACTCCTGAAGCCAAAAGCCCAGAAAAACAAGGGCTCAATGGGACCAGAGTTGAAGGAGATGCCACACCCAGGAAAACACCCATCAAAAAACCACCGAGGAAGAAAGGAAAGGAGGGAACGCCGGAGACGGAAGGCAAAACCACTCCAAAGACGGCCATTATGCCACCTCAGACTGTCAAATAG

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-101117-2 Human ortholog(s) of this gene implicated in Van den Ende-Gupta syndrome. Orthologous to human SCARF2 (scavenger receptor class F member 2).

Ensembl:

ensembl_id ENSDART00000180408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061653 lncRNA upstream 326034 10963027 ~ 10964817 (+) True XLOC_029893
TCONS_00061652 lncRNA upstream 506109 10761494 ~ 10784742 (+) False XLOC_029892
TCONS_00061405 lncRNA upstream 526685 10761576 ~ 10764166 (+) True XLOC_029892
TCONS_00061651 lncRNA upstream 569032 10720167 ~ 10721819 (+) True XLOC_029890
TCONS_00058583 lncRNA upstream 690689 10430548 ~ 10600162 (+) False XLOC_029888
TCONS_00061654 lncRNA downstream 136172 11497765 ~ 11501164 (+) True XLOC_029896
TCONS_00061655 lncRNA downstream 213646 11575239 ~ 11606706 (+) False XLOC_029897
TCONS_00061656 lncRNA downstream 213976 11575569 ~ 11577045 (+) False XLOC_029897
TCONS_00061657 lncRNA downstream 214655 11576248 ~ 11606706 (+) False XLOC_029897
TCONS_00061658 lncRNA downstream 214849 11576442 ~ 11606706 (+) True XLOC_029897
TCONS_00058579 mRNA upstream 1197420 10084100 ~ 10093431 (+) True XLOC_029883
TCONS_00058577 mRNA upstream 1234510 10046643 ~ 10056341 (+) False XLOC_029882
TCONS_00058578 mRNA upstream 1234515 10046698 ~ 10056336 (+) True XLOC_029882
TCONS_00058574 mRNA upstream 1244668 10014604 ~ 10046183 (+) False XLOC_029881
TCONS_00058575 mRNA upstream 1263259 10015002 ~ 10027592 (+) False XLOC_029881
TCONS_00058590 mRNA downstream 45942 11407535 ~ 11414648 (+) True XLOC_029895
TCONS_00058592 mRNA downstream 450496 11812089 ~ 11836557 (+) True XLOC_029900
TCONS_00058593 mRNA downstream 479312 11840905 ~ 11864424 (+) True XLOC_029901
TCONS_00058596 mRNA downstream 582199 11943792 ~ 11960218 (+) False XLOC_029905
TCONS_00058597 mRNA downstream 582461 11944054 ~ 11953275 (+) True XLOC_029905
TCONS_00058587 other upstream 541047 10747294 ~ 10749804 (+) False XLOC_029891
TCONS_00058588 other upstream 541488 10747740 ~ 10749363 (+) True XLOC_029891
TCONS_00058586 other upstream 569289 10719453 ~ 10721562 (+) False XLOC_029890
TCONS_00058585 other upstream 569292 10719302 ~ 10721559 (+) False XLOC_029890
TCONS_00058584 other upstream 778523 10511958 ~ 10512328 (+) True XLOC_029889
TCONS_00058594 other downstream 487784 11849377 ~ 11849491 (+) True XLOC_029902
TCONS_00058595 other downstream 538964 11900557 ~ 11900674 (+) True XLOC_029903
TCONS_00058601 other downstream 1168809 12530402 ~ 12541704 (+) False XLOC_029909
TCONS_00058604 other downstream 1249209 12610802 ~ 12610883 (+) True XLOC_029911
TCONS_00058611 other downstream 1565845 12927438 ~ 12927554 (+) True XLOC_029916

Expression Profile

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