XLOC_029883 (si:ch211-207k7.4)


Basic Information

Item Value
gene id XLOC_029883
gene name si:ch211-207k7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10084100 ~ 10093431 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058579
AACCCTGTTTCTTCTGTGTGGAAACATGATAACGCTACACAGACTTCGGATTTTGTTAAAAACTCCCGGATTTAAACATACTTATGCATGTATATCAAACGAACAACGTCTTAATATTGTTTTAACTCCGTGTTTGGCTTCAGGGAGAGCTGTCAGTTCTTACAGTAAAGACTTTAAGGATGTTTGTCACAGTAACGCAGCTAAAGGGCGCCTGACACTGAACTCTTTCAGCACAGTTACAGTCAACAGAGTCTGCTGGAACTGCGGAGCCTCTGCAGATTTATTTTTCTGTGCGTTTTGTAAAGTGATTCAACCTCCTGATAACAAGACCAGTTATTTTGACATCTTGAAATGCGAAGAAAATTTTTCTTTGGACACCCAGAAGCTTCAGCAGAAATATGTGAAGCTGCAAAGAGTTCTCCATCCTGACAACTTCACCCAGAAGTCACAGAAAGAGCAGGAGTATTCAGAAGAACAGTCGGCACTAGTGAACAAAGCCTACAGGACTCTGCAGAAACCTCTGAGTCGCGCCGTCTACATGCTGGAGCTGCGAGGGGTTTTGCTGGAGGAAGGAACGGATGCCACAGCAGACCCCGCATTACTCCTGGAGGTGATGGAGATCAACGAGAGCCTCGCCGAGACGCGGAGCCAAGACGAGGTCAGCGCCATCGGCCGGTCGGTGCAAGAGAAACTCAAAGACTTGACTGAACGGATGAATTCGTCCCTGAACAGAgGGGATCTGCTGGCCGCCAAAATGCTCCTAAACAAAATGAAGTACTTCACGAATATCCAGGAGAAGGTAAAAGACAGAATCACACAGGGTTGCTGAGGGAAAACCGTTTACAGTTTGCTATTGTAATCCATCTGAAAGAGTTCACAGAGTTTTATCTTGTtgtaatatttattgttaatagTGTTGGTTTATTGTTTGTAACTAAATAAAGTACTTTTATTTTAATCCTA

Function

GO:

id name namespace
GO:0097428 protein maturation by iron-sulfur cluster transfer biological_process
GO:0051259 protein complex oligomerization biological_process
GO:0044571 [2Fe-2S] cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051087 chaperone binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-97 Predicted to enable ATPase activator activity and chaperone binding activity. Predicted to be involved in [2Fe-2S] cluster assembly. Predicted to act upstream of or within protein complex oligomerization and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Orthologous to human HSCB (HscB mitochondrial iron-sulfur cluster cochaperone).

Ensembl:

ensembl_id ENSDARG00000075416

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058579 True 963 mRNA 0.44 6 10084100 10093431

Neighbor

gene id symbol gene type direction distance location
XLOC_029882 gstt2 coding upstream 27759 10046643 ~ 10056341 (+)
XLOC_029881 slc2a11b coding upstream 37917 10014604 ~ 10046183 (+)
XLOC_029880 NA coding upstream 200495 9881349 ~ 9883605 (+)
XLOC_029879 NA coding upstream 383858 9694317 ~ 9700242 (+)
XLOC_029878 NA coding upstream 406020 9674243 ~ 9678080 (+)
XLOC_029884 NA coding downstream 49458 10142889 ~ 10231246 (+)
XLOC_029885 NA coding downstream 153428 10246859 ~ 10275553 (+)
XLOC_029886 BX005024.1 coding downstream 172217 10265648 ~ 10266690 (+)
XLOC_029887 BX005024.2 coding downstream 242704 10336135 ~ 10336763 (+)
XLOC_029888 BX511089.4 coding downstream 285862 10379293 ~ 10600162 (+)
XLOC_029873 NA non-coding upstream 695651 9387055 ~ 9388449 (+)
XLOC_029872 NA non-coding upstream 703935 9379484 ~ 9380165 (+)

Expression


Co-expression Network