RNA id: TCONS_00058579


Basic Information

Item Value
RNA id TCONS_00058579
length 963
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_029883
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10084100 ~ 10093431 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACCCTGTTTCTTCTGTGTGGAAACATGATAACGCTACACAGACTTCGGATTTTGTTAAAAACTCCCGGATTTAAACATACTTATGCATGTATATCAAACGAACAACGTCTTAATATTGTTTTAACTCCGTGTTTGGCTTCAGGGAGAGCTGTCAGTTCTTACAGTAAAGACTTTAAGGATGTTTGTCACAGTAACGCAGCTAAAGGGCGCCTGACACTGAACTCTTTCAGCACAGTTACAGTCAACAGAGTCTGCTGGAACTGCGGAGCCTCTGCAGATTTATTTTTCTGTGCGTTTTGTAAAGTGATTCAACCTCCTGATAACAAGACCAGTTATTTTGACATCTTGAAATGCGAAGAAAATTTTTCTTTGGACACCCAGAAGCTTCAGCAGAAATATGTGAAGCTGCAAAGAGTTCTCCATCCTGACAACTTCACCCAGAAGTCACAGAAAGAGCAGGAGTATTCAGAAGAACAGTCGGCACTAGTGAACAAAGCCTACAGGACTCTGCAGAAACCTCTGAGTCGCGCCGTCTACATGCTGGAGCTGCGAGGGGTTTTGCTGGAGGAAGGAACGGATGCCACAGCAGACCCCGCATTACTCCTGGAGGTGATGGAGATCAACGAGAGCCTCGCCGAGACGCGGAGCCAAGACGAGGTCAGCGCCATCGGCCGGTCGGTGCAAGAGAAACTCAAAGACTTGACTGAACGGATGAATTCGTCCCTGAACAGAgGGGATCTGCTGGCCGCCAAAATGCTCCTAAACAAAATGAAGTACTTCACGAATATCCAGGAGAAGGTAAAAGACAGAATCACACAGGGTTGCTGAGGGAAAACCGTTTACAGTTTGCTATTGTAATCCATCTGAAAGAGTTCACAGAGTTTTATCTTGTtgtaatatttattgttaatagTGTTGGTTTATTGTTTGTAACTAAATAAAGTACTTTTATTTTAATCCTA

Function

GO:

id name namespace
GO:0097428 protein maturation by iron-sulfur cluster transfer biological_process
GO:0051259 protein complex oligomerization biological_process
GO:0044571 [2Fe-2S] cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0051087 chaperone binding molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-97 Predicted to enable ATPase activator activity and chaperone binding activity. Predicted to be involved in [2Fe-2S] cluster assembly. Predicted to act upstream of or within protein complex oligomerization and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Orthologous to human HSCB (HscB mitochondrial iron-sulfur cluster cochaperone).

Ensembl:

ensembl_id ENSDART00000109236

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058576 lncRNA upstream 42502 10029602 ~ 10041598 (+) True XLOC_029881
TCONS_00061403 lncRNA upstream 200495 9881349 ~ 9883605 (+) True XLOC_029880
TCONS_00061644 lncRNA upstream 383858 9694484 ~ 9700242 (+) False XLOC_029879
TCONS_00061647 lncRNA downstream 49458 10142889 ~ 10231246 (+) True XLOC_029884
TCONS_00061404 lncRNA downstream 153428 10246859 ~ 10275553 (+) True XLOC_029885
TCONS_00058582 lncRNA downstream 285862 10379293 ~ 10430646 (+) False XLOC_029888
TCONS_00061648 lncRNA downstream 285900 10379331 ~ 10445178 (+) False XLOC_029888
TCONS_00058583 lncRNA downstream 337117 10430548 ~ 10600162 (+) False XLOC_029888
TCONS_00058577 mRNA upstream 27759 10046643 ~ 10056341 (+) False XLOC_029882
TCONS_00058578 mRNA upstream 27764 10046698 ~ 10056336 (+) True XLOC_029882
TCONS_00058574 mRNA upstream 37917 10014604 ~ 10046183 (+) False XLOC_029881
TCONS_00058575 mRNA upstream 56508 10015002 ~ 10027592 (+) False XLOC_029881
TCONS_00058572 mRNA upstream 645730 9428876 ~ 9438370 (+) False XLOC_029877
TCONS_00058589 mRNA downstream 1197420 11290851 ~ 11361593 (+) False XLOC_029894
TCONS_00058590 mRNA downstream 1314104 11407535 ~ 11414648 (+) True XLOC_029895
TCONS_00058592 mRNA downstream 1718658 11812089 ~ 11836557 (+) True XLOC_029900
TCONS_00058593 mRNA downstream 1747474 11840905 ~ 11864424 (+) True XLOC_029901
TCONS_00058596 mRNA downstream 1850361 11943792 ~ 11960218 (+) False XLOC_029905
TCONS_00058525 other upstream 3208066 6875920 ~ 6876034 (+) True XLOC_029838
TCONS_00058523 other upstream 3220380 6858139 ~ 6863720 (+) True XLOC_029836
TCONS_00058515 other upstream 3379027 6699120 ~ 6705073 (+) True XLOC_029832
TCONS_00058510 other upstream 4468654 5615331 ~ 5615446 (+) True XLOC_029828
TCONS_00058507 other upstream 4731913 5352071 ~ 5352187 (+) True XLOC_029826
TCONS_00058580 other downstream 172217 10265648 ~ 10266690 (+) True XLOC_029886
TCONS_00058581 other downstream 242704 10336135 ~ 10336763 (+) True XLOC_029887
TCONS_00058584 other downstream 418527 10511958 ~ 10512328 (+) True XLOC_029889
TCONS_00058585 other downstream 625871 10719302 ~ 10721559 (+) False XLOC_029890
TCONS_00058586 other downstream 626022 10719453 ~ 10721562 (+) False XLOC_029890

Expression Profile

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