XLOC_029836 (elac1)


Basic Information

Item Value
gene id XLOC_029836
gene name elac1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6854345 ~ 6864127 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058521
ATTTATAGGCGTTGCCCTCTAGTGGTGACTTAAGGATAGGGAGGGTGGTGGTCATTACTAGAAATCCAACTTTTACAACAGTCCGTAGTTTTCTACGCATGTCTGCTCTTCATCAGGCGCGTCCTCGTCAGTGCTCGTACCCCGGATGTTGATATCAGAACGCGTGTGTTCGACTCCTGTCAGTCGTGCCTCAGCTGATAGCCATGGTTAACGCTCGTGTATCCTTCTCCTGACAGTGTTTATGTGTTACTAATCTGGTAAATGCCCAGAAATCTGCAAGATGTCGATGGATGTGACGTTCCTCGGGACCGGCTCCGCGTACCCGTCTCCTCACCGCGGCGCGTCCGCTCTCGTGTTGAGGACTGAAGGGGAAAACTGGCTCTTCGACTGCGGGGAGGGAACGCAGATCCAGCTGATGAAGAGCACACTCAGAGCCGGTAAAATCAGCAAGGTGTTCATCTCGCACCTTCATGGAGACCATCTGTTTGGTCTTCCCGGTTTGCTGTGCACCATCAGTCTGAATTTGAACCCTCAGCCAGATCAGCCTCCGCCCTGTGTGGACATTTACGGCCCGCGAGGACTGAGACTCTTCATCCGTGTGGCGTTGCAGTTGTCTGGCTCGCAGTTGCTTTTTCCGTATGCTGTGCATGAACTGCAGCCGTCCGATGAGCAGTGTCCTGAAGAGGGGCATCTCAGTCCTGCTCTGACCACCGCCAGTGAAACCCTTCACCCGCAGGAGCGTCCTGGCAGAACTGTACATCCAGACCCCGACACGGACTGTTACCACCTCATTGATGACAAACAGTTTGTGGTTAAAGCGTTCAAGCTCTTCCACAGAGTCCCCTCATTCGGCTTCTCGGTGGAGGAGAGAGAACGTCCGGGACGGCTGAACACAGACCTGCTGAAAGAACTAGGTTTGAAACCAGGCCCTCTATACGGGCGTCTGAAGAACGGACAGTCGGTGACTCTAGATAGTGGCCGTGTGTTGACAGCTGGTGAGGTGCTGGAGCCGCCGCTGAAGGGCCGGAAGGTGTGTGTTTTCGGGGACTGCAGTGCTCCACTGGGCGAGGGATTTAAACGGGCGTGTTACGGTGCTGATGTTCTGGTGCATGAGGCCACGCTGGAGAACGGGCAGCAGGAGAAGGCTGTTGAACATGGACACAGCACTCCTGGCATGGCTGCGGCGGTGGCGCTCACATGTGAGGCGAAAACACTGGTGCTCCACCACTTCAGTCAACGATACAAACCTGAAAATCTCCGGCGAGATGATGATGAAGACGATGTTTCAGAGCTGAAGAGACAAGCTGAGCTGGTGCTGCAGGGTTCCAGGACGGACGTCATTCTGGCTGAAGACTTTCTCACTCTGCCTGTGGCGCTCAAGAGGAATTCGACAACGTAGTACCTGTCAGATTTAGCCCATGTGGAAATACGTTTTCTagttattaaattttaatatgagaaaatgttttaataaagtcATTTTGTACCACA
>TCONS_00058522
ATCAGAACGCGTGTGTTCGACTCCTGTCAGTCGTGCCTCAGCTGATAGCCATGGTTAACGCTCGTGTATCCTTCTCCTGACAGTGTTTATGTGTTACTAATCTGGTAAATGCCCAGAAATCTGCAAGATGTCGATGGATGTGACGTTCCTCGGGACCGGCTCCGCGTACCCGTCTCCTCACCGCGGCGCGTCCGCTCTCGTGTTGAGGACTGAAGGGGAAAACTGGCTCTTCGACTGCGGGGAGGGAACGCAGATCCAGCTGATGAAGAGCACACTCAGAGCCGGTCAGACTCTCACTCACTGCCGCTGCTGTTCTCTGACACGGGTCTCTGTGTTGTGGCAGGTTTCTACTGTTGAGTTGTCAGTCAGAAAAAAAGGTAAAATCAGCAAGGTGTTCATCTCGCACCTTCATGGAGACCATCTGTTTGGTCTTCCCGGTTTGCTGTGCACCATCAGTCTGAATTTGAACCCTCAGCCAGATCAGCCTCCGCCCTGTGTGGACATTTACGGCCCGCGAGGACTGAGACTCTTCATCCGTGTGGCGTTGCAGTTGTCTGGCTCGCAGTTGCTTTTTCCGTATGCTGTGCATGAACTGCAGCCGTCCGATGAGCAGTGTCCTGAAGAGGGGCATCTCAGTCCTGCTCTGACCACCGCCAGTGAAACCCTTCACCCGCAGGAGCGTCCTGGCAGAACTGTACATCCAGACCCCGACACGGACTGTTACCACCTCATTGATGACAAACAGTTTGTGGTTAAAGCGTTCAAGCTCTTCCACAGAGTCCCCTCATTCGGCTTCTCGGTGGAGGAGAGAGAACGTCCGGGACGGCTGAACACAGACCTGCTGAAAGAACTAGGTTTGAAACCAGGCCCTCTATACGGGCGTCTGAAGAACGGACAGTCGGTGACTCTAGATAGT
>TCONS_00058523
tactgtgtatacttgaaacatccaggcaggtgtgttgatgcaagatggaactaaaccctgcaaggacaccggctctccaggatcaggattggtgacccctgcactagtgGTAAAATCAGCAAGGTGTTCATCTCGCACCTTCATGGAGACCATCTGTTTGGTCTTCCCGGTTTGCTGTGCACCATCAGTCTGAATTTGAACCCTCAGCCAGATCAGCCTCCGCCCTGTGTGGACATTTACGGCCCGCGAGGACTGAGACTCTTCATCCGTGTGGCGTTGCAGTTGTCTGGCTCGCAGTTGCTTTTTCCGTATGCTGTGCATGAACTGCAGCCGTCCGATGAGCAGTGTCCTGAAGAGGGGCATCTCAGTCCTGCTCTGACCACCGCCAGTGAAACCCTTCACCCGCAGGAGCGTCCTGGCAGAACTGTACATCCAGACCCCGACACGGACTGTTACCACCTCATTGATGACAAACAGTTTGTGGTTAAAGCGTTCAAGCTCTTCCACAGAGTCCCCTCATTCGGCTTCTCGGTGGAGGAGAGAGAACGTCCGGGACGGCTGAACACAGACCTGCTGAAAGAACTAGGTTTGAAACCAGGCCCTCTATACGGGCGTCTGAAGAACGGACAGTCGGTGACTCTAGATAGTGGCCGTGTGTTGACAGCTGGTGAGGTGCTGGAGCCGCCGCTGAAGGGCCGGAAGGTGTGTGTTTTCGGGGACTGCAGTGCTCCACTGGGCGAGGGATTTAAACGGGCG

Function

symbol description
elac1 Predicted to enable 3'-tRNA processing endoribonuclease activity. Predicted to act upstream of or within tRNA 3'-trailer cleavage. Predicted to be active in nucleus. Orthologous to human ELAC1 (elaC ribonuclease Z 1).

GO:

id name namespace
GO:0042779 tRNA 3'-trailer cleavage biological_process
GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic biological_process
GO:0005634 nucleus cellular_component
GO:0042781 3'-tRNA processing endoribonuclease activity molecular_function
GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-246 Predicted to enable 3'-tRNA processing endoribonuclease activity. Predicted to act upstream of or within tRNA 3'-trailer cleavage. Predicted to be active in nucleus. Orthologous to human ELAC1 (elaC ribonuclease Z 1).

Ensembl:

ensembl_id ENSDARG00000045095

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058521 False 1491 mRNA 0.53 3 6854345 6864127
TCONS_00058522 False 916 mRNA 0.54 3 6854498 6863612
TCONS_00058523 True 756 processed_transcript 0.55 3 6858139 6863720

Neighbor

gene id symbol gene type direction distance location
XLOC_029835 me2 coding upstream 10039 6796291 ~ 6844306 (+)
XLOC_029834 areg coding upstream 63505 6755466 ~ 6790840 (+)
XLOC_029833 CU856358.1 coding upstream 125392 6722310 ~ 6728953 (+)
XLOC_029832 pxna coding upstream 136225 6670945 ~ 6718120 (+)
XLOC_029831 zgc:110796 coding upstream 234340 6617401 ~ 6620005 (+)
XLOC_029837 smad4b coding downstream 11145 6875272 ~ 6922168 (+)
XLOC_029838 CT955987.1 coding downstream 11793 6875920 ~ 6876034 (+)
XLOC_029839 NA coding downstream 68935 6933062 ~ 6939709 (+)
XLOC_029840 stpg2 coding downstream 90035 6954162 ~ 7005117 (+)
XLOC_029841 CABZ01041962.1 coding downstream 91773 6955900 ~ 6962784 (+)
XLOC_029830 NA non-coding upstream 456419 6396274 ~ 6397926 (+)
XLOC_029828 CABZ01075627.1 non-coding upstream 1238899 5615331 ~ 5615446 (+)
XLOC_029826 CU929057.1 non-coding upstream 1502158 5352071 ~ 5352187 (+)
XLOC_029825 NA non-coding upstream 1528188 5242666 ~ 5326157 (+)
XLOC_029842 NA non-coding downstream 175317 7039444 ~ 7106159 (+)
XLOC_029845 NA non-coding downstream 1050889 7915016 ~ 7919510 (+)
XLOC_029846 NA non-coding downstream 1122174 7986301 ~ 8000304 (+)

Expression


Co-expression Network