RNA id: TCONS_00058515


Basic Information

Item Value
RNA id TCONS_00058515
length 551
RNA type processed_transcript
GC content 0.39
exon number 2
gene id XLOC_029832
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6670945 ~ 6718120 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTATGGCTCAGGGCAAGAGTTCCCCCACCAGTGTCCCGAAGCAGGGGAATAAACTGGACAATATGCTGGGAAGTCTGCAGTCAGACCTCAACCGACTGGGTGTCCAGACTGTTGCCAAAGGCGTTTGTGGAGCTTGCAAAAAACCAATCGCTGGCCAGATGTGCACCGCTGGATTCTAGAACACAgatgcagcagctcatttgcataatGTTCAAAACACGCAAAATTAGGTCACAAACGTtgcatgattcatttaaatattctCCTTTGAAACAGAAATGATTGAATATGTCTCTTCAAAAATCACTGTGTCTATGCACTGTATATCTTTAGTAAATTTTGACAGTGGTTATTTTTATTGCTGGAGCAAGCTGTTGGAAAATCTGACtcataatttaaacaaaatgtagCTTGTAAGGCTGATGGAAATGGTGGTGCTGTGAACTGTTTAGcttatcattttaattatattaaatacttCACACTACTTGATGAggaaccatatatggtaacttcattgacagaattttcatttcagtgCACGTTTAAA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0061055 myotome development biological_process
GO:0043542 endothelial cell migration biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005938 cell cortex cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040105-1 Predicted to enable transcription coregulator activity. Acts upstream of or within myotome development; skeletal muscle tissue development; and somitogenesis. Predicted to be located in cell cortex; cell junction; and cytoskeleton. Predicted to be active in cytosol; focal adhesion; and plasma membrane. Is expressed in several structures, including Kupffer's vesicle; eye; myotome; notochord posterior region; and somite. Orthologous to human PXN (paxillin).

Ensembl:

ensembl_id ENSDART00000172480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061629 lncRNA upstream 301194 6396274 ~ 6397926 (+) False XLOC_029830
TCONS_00061630 lncRNA upstream 301194 6396297 ~ 6397926 (+) False XLOC_029830
TCONS_00061631 lncRNA upstream 301194 6396331 ~ 6397926 (+) True XLOC_029830
TCONS_00061395 lncRNA upstream 1372963 5242666 ~ 5326157 (+) False XLOC_029825
TCONS_00061396 lncRNA upstream 1372963 5321599 ~ 5326157 (+) True XLOC_029825
TCONS_00058516 lncRNA downstream 17237 6722310 ~ 6728953 (+) True XLOC_029833
TCONS_00061632 lncRNA downstream 227989 6933062 ~ 6939709 (+) False XLOC_029839
TCONS_00061633 lncRNA downstream 228107 6933180 ~ 6939709 (+) True XLOC_029839
TCONS_00061634 lncRNA downstream 334371 7039444 ~ 7063726 (+) False XLOC_029842
TCONS_00061397 lncRNA downstream 334394 7039467 ~ 7106159 (+) True XLOC_029842
TCONS_00058512 mRNA upstream 79115 6617401 ~ 6620005 (+) True XLOC_029831
TCONS_00058511 mRNA upstream 1002947 5689476 ~ 5696173 (+) True XLOC_029829
TCONS_00058509 mRNA upstream 1199164 5406503 ~ 5499956 (+) True XLOC_029827
TCONS_00058508 mRNA upstream 1259718 5398966 ~ 5439402 (+) False XLOC_029827
TCONS_00058506 mRNA upstream 1868764 4806851 ~ 4830356 (+) True XLOC_029822
TCONS_00058517 mRNA downstream 50393 6755466 ~ 6790840 (+) False XLOC_029834
TCONS_00058518 mRNA downstream 50421 6755494 ~ 6783944 (+) True XLOC_029834
TCONS_00058519 mRNA downstream 91218 6796291 ~ 6821168 (+) False XLOC_029835
TCONS_00058520 mRNA downstream 91218 6796291 ~ 6844306 (+) True XLOC_029835
TCONS_00058521 mRNA downstream 149272 6854345 ~ 6864127 (+) False XLOC_029836
TCONS_00058510 other upstream 1083674 5615331 ~ 5615446 (+) True XLOC_029828
TCONS_00058507 other upstream 1346933 5352071 ~ 5352187 (+) True XLOC_029826
TCONS_00058497 other upstream 2356353 4332220 ~ 4342767 (+) False XLOC_029816
TCONS_00058487 other upstream 2671242 4016273 ~ 4027878 (+) False XLOC_029813
TCONS_00058523 other downstream 153066 6858139 ~ 6863720 (+) True XLOC_029836
TCONS_00058525 other downstream 170847 6875920 ~ 6876034 (+) True XLOC_029838
TCONS_00058580 other downstream 3560575 10265648 ~ 10266690 (+) True XLOC_029886
TCONS_00058581 other downstream 3631062 10336135 ~ 10336763 (+) True XLOC_029887
TCONS_00058584 other downstream 3806885 10511958 ~ 10512328 (+) True XLOC_029889

Expression Profile

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