Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058497 |
| length | 896 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.48 |
| exon number | 7 |
| gene id | XLOC_029816 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 4332220 ~ 4342866 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019265 | glycine biosynthetic process, by transamination of glyoxylate | biological_process |
| GO:0042133 | neurotransmitter metabolic process | biological_process |
| GO:0042136 | neurotransmitter biosynthetic process | biological_process |
| GO:0032918 | spermidine acetylation | biological_process |
| GO:0008652 | cellular amino acid biosynthetic process | biological_process |
| GO:0004760 | serine-pyruvate transaminase activity | molecular_function |
| GO:0019809 | spermidine binding | molecular_function |
| GO:0008453 | alanine-glyoxylate transaminase activity | molecular_function |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | molecular_function |
| GO:0008080 | N-acetyltransferase activity | molecular_function |
| GO:0004145 | diamine N-acetyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050913-41 | Enables diamine N-acetyltransferase activity. Predicted to be involved in spermidine acetylation. Is expressed in several structures, including digestive system; eye; gill; heart; and pleuroperitoneal region. Orthologous to human SAT1 (spermidine/spermine N1-acetyltransferase 1). |
| ensembl_id | ENSDART00000147691 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058493 | lncRNA | upstream | 283124 | 4046771 ~ 4049096 (+) | True | XLOC_029813 |
| TCONS_00061618 | lncRNA | upstream | 304342 | 4016371 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00061619 | lncRNA | upstream | 304342 | 4016994 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00058492 | lncRNA | upstream | 304430 | 4017235 ~ 4027790 (+) | False | XLOC_029813 |
| TCONS_00058479 | lncRNA | upstream | 869359 | 3457557 ~ 3462861 (+) | True | XLOC_029808 |
| TCONS_00061620 | lncRNA | downstream | 566587 | 4909354 ~ 4914933 (+) | False | XLOC_029823 |
| TCONS_00061621 | lncRNA | downstream | 566919 | 4909686 ~ 4912079 (+) | True | XLOC_029823 |
| TCONS_00061622 | lncRNA | downstream | 820496 | 5163263 ~ 5171332 (+) | False | XLOC_029824 |
| TCONS_00061623 | lncRNA | downstream | 820498 | 5163265 ~ 5171332 (+) | False | XLOC_029824 |
| TCONS_00061627 | lncRNA | downstream | 820530 | 5163297 ~ 5171332 (+) | False | XLOC_029824 |
| TCONS_00058495 | mRNA | upstream | 13531 | 4298636 ~ 4318689 (+) | True | XLOC_029815 |
| TCONS_00058494 | mRNA | upstream | 189265 | 4054704 ~ 4142955 (+) | True | XLOC_029814 |
| TCONS_00058486 | mRNA | upstream | 279922 | 4016271 ~ 4052298 (+) | False | XLOC_029813 |
| TCONS_00058488 | mRNA | upstream | 279922 | 4016283 ~ 4052298 (+) | False | XLOC_029813 |
| TCONS_00058489 | mRNA | upstream | 283005 | 4016301 ~ 4049215 (+) | False | XLOC_029813 |
| TCONS_00058500 | mRNA | downstream | 23664 | 4366431 ~ 4374375 (+) | False | XLOC_029817 |
| TCONS_00058501 | mRNA | downstream | 23679 | 4366446 ~ 4366598 (+) | True | XLOC_029817 |
| TCONS_00058502 | mRNA | downstream | 93638 | 4436405 ~ 4470474 (+) | True | XLOC_029818 |
| TCONS_00058503 | mRNA | downstream | 190477 | 4533244 ~ 4547917 (+) | True | XLOC_029819 |
| TCONS_00058504 | mRNA | downstream | 221466 | 4564233 ~ 4571382 (+) | True | XLOC_029820 |
| TCONS_00058487 | other | upstream | 304342 | 4016273 ~ 4027878 (+) | False | XLOC_029813 |
| TCONS_00058491 | other | upstream | 307231 | 4016994 ~ 4024989 (+) | False | XLOC_029813 |
| TCONS_00058490 | other | upstream | 307263 | 4016371 ~ 4024957 (+) | False | XLOC_029813 |
| TCONS_00058477 | other | upstream | 1161394 | 3170736 ~ 3170826 (+) | True | XLOC_029807 |
| TCONS_00058475 | other | upstream | 1497894 | 2815026 ~ 2834326 (+) | True | XLOC_029805 |
| TCONS_00058507 | other | downstream | 1009304 | 5352071 ~ 5352187 (+) | True | XLOC_029826 |
| TCONS_00058510 | other | downstream | 1272564 | 5615331 ~ 5615446 (+) | True | XLOC_029828 |
| TCONS_00058515 | other | downstream | 2356353 | 6699120 ~ 6705073 (+) | True | XLOC_029832 |
| TCONS_00058523 | other | downstream | 2515372 | 6858139 ~ 6863720 (+) | True | XLOC_029836 |
| TCONS_00058525 | other | downstream | 2533153 | 6875920 ~ 6876034 (+) | True | XLOC_029838 |
