RNA id: TCONS_00061647


Basic Information

Item Value
RNA id TCONS_00061647
length 944
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_029884
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 10142889 ~ 10231246 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGGTACTATCCAATCTCCGCCGCCGCCCGCCCTCTCTCCAATTCACAGTAACTAACAGCACAAACACCCACCTGTTCTCAACTTCATTACTCAAAATAACCAAGTCCGACCCGCCCTCCAGTTCTCTCTGAATTTCGGAAACAAATGGTGGCACGCACTGTATGCTCTATATCTTTAAATAATGCACAAATTGAGGGAGCAACAGCCATACCATTTTCCCGCCGAATGCATTTCCGcttctgaccacaagatggcggACATCCACAGCAGAATCCCAACAGTGAAGCTTGGATGAGAAATCAGGCTAATCTTCTGTTAGTGAAGTTGCTGTGGGATATCATGAGAAGGACTGTTAAGAGTAAGATTCATTCAAGTTGGATTTAGGAGCCGCTTCCGCAAAATCTGGAACCAGCGATGCCATGTTGCTTCATGATGTCACATGTTGAAGACATCTGATTGTGATCCTCTCTGATCCAGCCCGTCTTATTACATTCCTTCATTCCCAGACACTGTCATCTCGCTCATATTAAATTCTTATCACACAGTTCAAGTCAGCGGCAGTGGCATTAAATGCACTGTAAACatactgattattttttttacatccctACATCACGTGCTTTTAAAAAATAGTCTCTTCATTAAAAACATGGACTTTCGTGTAACAATaaactaaatgttaaaatatgttagaccttttaacaccatttatatttgtttcagatATAACAGGTAATGTTCTTGTTGTCATTTTCCCAATAAGAAAAGGCCTGTTTTGAatttctttagaatatcttgaTTAAATCAACAACATTTAAGTAATTTTAATATTATCTAAGAACGTATTTGCTATAACAGCAGCActaattggaaataaaataattgtatactgtatgtacagtgcCAAGAATAAATTAGTATACTCCTTATTAAAATTAGTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058576 lncRNA upstream 101291 10029602 ~ 10041598 (+) True XLOC_029881
TCONS_00061403 lncRNA upstream 259284 9881349 ~ 9883605 (+) True XLOC_029880
TCONS_00061642 lncRNA upstream 442647 9694479 ~ 9700242 (+) False XLOC_029879
TCONS_00061404 lncRNA downstream 15613 10246859 ~ 10275553 (+) True XLOC_029885
TCONS_00058582 lncRNA downstream 148047 10379293 ~ 10430646 (+) False XLOC_029888
TCONS_00061648 lncRNA downstream 148085 10379331 ~ 10445178 (+) False XLOC_029888
TCONS_00058583 lncRNA downstream 199302 10430548 ~ 10600162 (+) False XLOC_029888
TCONS_00061649 lncRNA downstream 199326 10430572 ~ 10445178 (+) False XLOC_029888
TCONS_00058579 mRNA upstream 49458 10084100 ~ 10093431 (+) True XLOC_029883
TCONS_00058577 mRNA upstream 86548 10046643 ~ 10056341 (+) False XLOC_029882
TCONS_00058578 mRNA upstream 86553 10046698 ~ 10056336 (+) True XLOC_029882
TCONS_00058574 mRNA upstream 96706 10014604 ~ 10046183 (+) False XLOC_029881
TCONS_00058575 mRNA upstream 115297 10015002 ~ 10027592 (+) False XLOC_029881
TCONS_00058589 mRNA downstream 1059605 11290851 ~ 11361593 (+) False XLOC_029894
TCONS_00058590 mRNA downstream 1176289 11407535 ~ 11414648 (+) True XLOC_029895
TCONS_00058592 mRNA downstream 1580843 11812089 ~ 11836557 (+) True XLOC_029900
TCONS_00058593 mRNA downstream 1609659 11840905 ~ 11864424 (+) True XLOC_029901
TCONS_00058596 mRNA downstream 1712546 11943792 ~ 11960218 (+) False XLOC_029905
TCONS_00058525 other upstream 3266855 6875920 ~ 6876034 (+) True XLOC_029838
TCONS_00058523 other upstream 3279169 6858139 ~ 6863720 (+) True XLOC_029836
TCONS_00058515 other upstream 3437816 6699120 ~ 6705073 (+) True XLOC_029832
TCONS_00058510 other upstream 4527443 5615331 ~ 5615446 (+) True XLOC_029828
TCONS_00058507 other upstream 4790702 5352071 ~ 5352187 (+) True XLOC_029826
TCONS_00058580 other downstream 34402 10265648 ~ 10266690 (+) True XLOC_029886
TCONS_00058581 other downstream 104889 10336135 ~ 10336763 (+) True XLOC_029887
TCONS_00058584 other downstream 280712 10511958 ~ 10512328 (+) True XLOC_029889
TCONS_00058585 other downstream 488056 10719302 ~ 10721559 (+) False XLOC_029890
TCONS_00058586 other downstream 488207 10719453 ~ 10721562 (+) False XLOC_029890

Expression Profile

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