XLOC_029909 (rfc5)


Basic Information

Item Value
gene id XLOC_029909
gene name rfc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12528693 ~ 12549732 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058599
GGAAATATGCGTGTAGTCAGAAAAACGCGCCAAGGCACATCGCGCGGAGGATTGACCAAAATATAAGAACTCATGGCGTCAACAAGTAAAACACAACCTCAAGCGAGAAATTTACCATGgGTTGAAAAGTACAGACCACAGACGTTAGACGACCTCATCTCTCACCAAGACATCCTGAGCACAAtcCAGAAGTTCATCAGTGAAGACCGACTGCCTCATCTGCTCTTCTatggacctccaggaacaggaAAGACCTCCACTATATTAGCATGTGCCAGACAGCTGTACAAAGACAAAGAGTTCAACTCCATGGTCCTGGAGCTCAATGCATCAGATGATCGTGGTATAGATGTGGTAAGAGGGCCGATCCTCAGCTTTGCCAGCACACGGACCATCTTCAAGAAAGGCTTTAAGTTGGTGATCCTGGACGAGGCGGATGCAATGACCCAGGACGCTCAGAATGCTTTAAGGAGAGtcaTTGAGAAGTTCACAGAGAACACCCGTTTCTGTCTGATCTGTAACTACCTTTCAAAGATCATTCCTGCACTTCAGTCTCGATGCACACGCTTTCGTTTCGGCCCTCTGTCCCAGAACCAGATGATTCCCAGACTAGAGCATGTAATCCAGCAGGAGAGCATTGACATCACTCCAGATGGCATGAAGGCCATTGTGACCCTCTCAACAGGAGACATGAGACGATCACTGAACATTTTACAGAGTACTCATATGGCATATGGGAAGGTGACGGAGGAGACAGTTTACACGTGTACTGGACATCCTCTCAGATCAGACATCGCCAACATACTGGACTGGGCTCTTAATAAAGACTTCACCACTGCTTATAACCAAATCCTGGAGCTGAAAACTCTCAAAGGTCTGGCACTTCATGACATTTTAACTGAAGTCCATCTTCTCATTCACCGCGTGGACTTCCCACCCTCTATCCGCATGGGCTTGCTTATAAAACTTGCAGATATTGAGTACCGTCTGGCCTCTGGAACCAGCGAGAAGATTCAGCTGAGCTCAATGGTCGCTGCTTTCCAGGCTGTTAGAGACATAGTCGTCAGCGATGGATAGATCATTTGGTTTCCAACTTTGAAACGTAGATCTTTGATGTCATGAGattaagagatagttcacccaaaaatgaaaatttactcaattCAGTTCTAAACCTCTGTGActttgtttgttctgttgaacgAACAGAGGATACACTGAAGAAAGCTTGAAAAgcggtaatcattgacttctataggAGGAAAACTAAatcctatggatgtcaatggttacaggtttctggctcgcttcaaaatatattttgtattcaaccgttgaaaaaaaaactcaaacaggtttggaagaagtgaatgactttcagttttggatgaattattcctttaataaCCTCATGTAGTTTTGACCACAGTTTTGCTCAGAACTCTGTAATGTTGTTGAAATTAAATTGTTCTGCTTGAAATGAAGCACATTTCAGTACTTTGTTAAAGAAATGTGTCATTTTCAAATTGGCTgtgtaaagaaaataaatgtctttaaataaaaa
>TCONS_00058600
CGTCAACAAGTAAAACACAACCTCAAGCGAGAAATTTACCATGgGTTGAAAAGTACAGACCACAGACGTTAGACGACCTCATCTCTCACCAAGACATCCTGAGCACAAtcCAGAAGTTCATCAGTGAAGACCGACTGCCTCATCTGCTCTTCTatggacctccaggaacaggaAAGACCTCCACTATATTAGCATGTGCCAGACAGCTGTACAAAGACAAAGAGTTCAACTCCATGGTCCTGGAGCTCAATGCATCAGATGATCGTGGTATAGATGTGGTAAGAGGGCCGATCCTCAGCTTTGCCAGCACACGGACCATCTTCAAGAAAGGCTTTAAGTTGGTGATCCTGGACGAGGCGGATGCAATGACCCAGGACGCTCAGAATGCTTTAAGGAGAGGTAGTGCACCATCTGCCCCTCCATCAGCTCACCTGCTGAGCCCCCAAATGGCCCCATGGCAGAAGAATAGAGTTTGCCATTTTACTCTCCACAGTCAGACATGAATGAGAGCAGGGCAATTACTGTATCATTGGGCAGAAAACATTATATTAGGACGATCAAAGCATGTGATTTTATCAAATAACTGCATGCTTTATTCTGGACATTCTtgtgcaaa
>TCONS_00058601
gGTTGAAAAGTACAGACCACAGACGTTAGACGACCTCATCTCTCACCAAGACATCCTGAGCACAAtcCAGAAGTTCATCAGTGAAGACCGACTGCCTCATCTGCTCTTCTatggacctccaggaacaggaAAGACCTCCACTATATTAGCATGTGCCAGACAGCTGTACAAAGACAAAGAGTTCAACTCCATGGTCCTGGAGCTCAATGCATCAGATGATCGTGGTATAGATGTGGTAAGAGGGCCGATCCTCAGCTTTGCCAGCACACGGACCATCTTCAAGCTTTAAGTTGGTGATCCTGGACGAGGCGGATGCAATGACCCAGGACGCTCAGAATGCTTTAAGGAGAGtcaTTGAGAAGTTCACAGAGAACACCCGTTTCTGTCTGATCTGTAACTACCTTTCAAAGATCATTCCTGCACTTCAGTCTCGATGCACACGCTTTCGTTTCGGCCCTCTGTCCCAGAACCAGATGATTCCCAGACTAGAGCATGTAATCCAGCAGGAGAGCATTGACATCACTCCAGATGGCATGAAGGCCATTGTGACCCTCTCAACAGGAGACATGAGACGATCACTGAACATTTTACAGAGTACTCATATGGCATATGGGAAGGTGACGGAGGAGACAGTTTACACGTGTACTGGACATCCTCTCAGATCAGACATCG
>TCONS_00061662
gGTTGAAAAGTACAGACCACAGACGTTAGACGACCTCATCTCTCACCAAGACATCCTGAGCACAAtcCAGAAGTTCATCAGTGAAGACCGACTGCCTCATCTGCTCTTCTatggacctccaggaacaggaAAGACCTCCACTATATTAGCATGTGCCAGACAGCTGTACAAAGACAAAGAGTTCAACTCCATGGTCCTGGAGCTCAATGCATCAGATGATCGTGGTATAGATGTGGTAAGAGGGCCGATCCTCAGCTTTGCCAGCACACGGACCATCTTCAAGCTTTAAGTTGGTGATCCTGGACGAGGCGGATGCAATGACCCAGGACGCTCAGAATGCTTTAAGGAGAGtcaTTGAGAAGTTCACAGAGAACACCCGTTTCTGTCTGATCTGTAACTACCTTTCAAAGATCATTCCTGCACTTCAGTCTCGATGCACACGCTTTCGTTTCGGCCCTCTGTCCCAGAACCAGATGATTCCCAGACTAGAGCATGTAATCCAGCAGGAGAGCATTGACATCACTCCAGATGGCATGAAGGCCATTGTGACCCTCTCAACAGGAGACATGAGACGATCACTGAACATTTTACAGAGTACTCATATGGCATATGGGAAGGTGACGGAGGAGACAGTTTACACGTGTACTGGACATCCTCTCAGATCAGACATCGCCAACATACTGGACTGGGCTCTTAATAAAGACTTCACCACTGCTTATAACCAAATCCTGGAGCTGAAAACTCTCAAAGGTCTGGCACTTCATGACATTTTAACTGAAGTCCATCTTCTCATTCACCGCGTGGACTTCCCACCCTCTATCCGCATGGGCTTGCTTATAAAACTTGCAGATATTGAGTACCGTCTGGCCTCTGGAACCAGCGAGAAGATTCAGCTGAGCTCAATGGTCGCTGCTTTCCAGGCTGTTAGAGACATAGTCGTCAGCGATGGATAGATCATTTGGTTTCCAACTTTGAAACGTAGATCTTTGATGTCATGAGattaagagatagttcacccaaaaatgaaaatttactcaattCAGTTCTAAACCTCTGTGActttgtttgttctgttgaacgAACAGAGGATACACTGAAGAAAGCTTGAAAAgcggtaatcattgacttctataggAGGAAAACTAAatcctatggatgtcaatggttacaggtttctggctcgcttcaaaatatattttgtattcaaccgttgaaaaaaaaactcaaacaggtttggaagaagtgaatgactttcagttttggatgaattattcctttaataaCCTCATGTAGTTTTGACCACAGTTTTGCT
>TCONS_00058602
ttttttttcactgatagCATTGACATCACTCCAGATGGCATGAAGGCCATTGTGACCCTCTCAACAGGAGACATGAGACGATCACTGAACATTTTACAGAGTACTCATATGGCATATGGGAAGGTGACGGAGGAGACAGTTTACACGTGTACTGGACATCCTCTCAGATCAGACATCGCCAACATACTGGACTGGGCTCTTAATAAAGACTTCACCACTGCTTATAACCAAATCCTGGAGCTGAAAACTCTCAAAGGTCTGGCACTTCATGACATTTTAACTGAAGTCCATCTTCTCATTCACCGCGTGGACTTCCCACCCTCTATCCGCATGGGCTTGCTTATAAAACTTGCAGATATTGAGTACCGTCTGGCCTCTGGAACCAGCGAGAAGATTCAGCTGAGCTCAATGGTCGCTGCTTTCCAGGCTGTTAGAGACATAGTCGTCAGCGATGGATAGATCATTTGGTTTCCAACTTTGAAACGTAGATCTTTGATGTCATGAGattaagagatagttcacccaaaaatgaaaatttactcaattCAGTTCTAAACCTCTGTGActttgtttgttctgttgaacgAACAGAGGATACACTGAAGAAAGCTTGAAAAgcggtaatcattgacttctataggAGGAAAACTAAatcctatggatgtcaatggttacaggtttctggctcgcttcaaaatatattttgtattcaaccgttgaaaaaaaaactcaaacaggtttggaagaagtgaatgactttcagttttggatgaattattcctttaataaCCTCATGTAGTTTTGACCACAGTTTTGCT

Function

symbol description
rfc5 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Orthologous to human RFC5 (replication factor C subunit 5).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005663 DNA replication factor C complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040907-1 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Orthologous to human RFC5 (replication factor C subunit 5).

Ensembl:

ensembl_id ENSDARG00000035634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058599 False 1564 mRNA 0.43 11 12528693 12549732
TCONS_00058600 False 616 lncRNA 0.47 5 12528769 12537080
TCONS_00058601 False 672 processed_transcript 0.48 7 12530402 12541704
TCONS_00061662 False 1312 lncRNA 0.44 10 12530402 12549604
TCONS_00058602 True 818 lncRNA 0.41 5 12541448 12549604

Neighbor

gene id symbol gene type direction distance location
XLOC_029908 zgc:171242 coding upstream 11325 12515402 ~ 12517368 (+)
XLOC_029907 NA coding upstream 502739 12025519 ~ 12025954 (+)
XLOC_029906 NA coding upstream 543809 11982586 ~ 11984884 (+)
XLOC_029905 SPRING1 coding upstream 568475 11943792 ~ 11960218 (+)
XLOC_029904 NA coding upstream 613403 11909715 ~ 11915290 (+)
XLOC_029910 si:dkey-98f17.5 coding downstream 40671 12590403 ~ 12625837 (+)
XLOC_029911 dre-mir-22b coding downstream 61070 12610802 ~ 12610883 (+)
XLOC_029912 pole coding downstream 193908 12743640 ~ 12804906 (+)
XLOC_029913 pes coding downstream 287181 12836913 ~ 12865386 (+)
XLOC_029914 gal3st1a coding downstream 338528 12888260 ~ 12906542 (+)
XLOC_029903 CU571331.1 non-coding upstream 628019 11900557 ~ 11900674 (+)
XLOC_029902 CT583689.1 non-coding upstream 679202 11849377 ~ 11849491 (+)
XLOC_029916 BX470167.1 non-coding downstream 377706 12927438 ~ 12927554 (+)
XLOC_029917 NA non-coding downstream 443004 12992736 ~ 12999041 (+)
XLOC_029918 NA non-coding downstream 546735 13096467 ~ 13098456 (+)
XLOC_029920 dre-mir-130c-2 non-coding downstream 739096 13288828 ~ 13288906 (+)

Expression


Co-expression Network