XLOC_029913 (pes)


Basic Information

Item Value
gene id XLOC_029913
gene name pes
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12836913 ~ 12865386 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058606
CAGCGATTCTCATGAATTTCTACGCAGGCATTCGCTCGGGTGAGCAAAATCCCAGGGTCCTACTCTCTCGGCTCTCTGGCGTCACACAAAACACGTGTGTTCTGGAGACGCACGTTAGCGCTGAAGTATATTTGCTGTGTTTATTtacagtggtttttatattaagTTTTGCCGAGTGACAAAACGCAGATACCGCTGCCATGGGCGGATTACAAAAGAAGAAGTATGAGAGTGGGTCAGCCACTAACTACATCACCAGGAATAAAGCTCGTAAGAAGCTGAGTCTGAGTCTGGCTGATTTCAGGCGGTTATGCATATTAAAAGGAATTTATCCTCATGAGCCCAAACACAAAAAGAAGGTCAACAAGGGCTCGACGGCTGCTAGAACTTACTATCTGCTGAAAGACATCCGCTTCCTGCTGCATGAACCCATCGTTGGCAAATTCAGAGAGTATAAGATCTTTGTCCGGAAGCTGCGGAAAGCGTATGGGAAGGCTGAGTGGAGCGCAGTGGAGAGACTGAAAGAAAACAAGCCTGGCTACAAACTGGACCACATCATCAAGGAGAGGTATCCCACGTTCATTGATGCTCTCCGAGATGTGGACGATGCCCTTTCTATGTGTTTTCTGTTCTCTACATTCGCTCGTACTGGAAAATGCCACGTCCAGACAATTCAGCTGTGTCGGAGACTCAGTGTTGAGTGGATGAACTACATCATCTCCTCACGCTCCCTAAGAAAGgtttttctttccattaaGGGTATTTACTATCAGGCAGAGGTTTTGGGACAGACCATCACATGGATCGTACCATATCAGTTTGCCCATAATCATCCTACAGATGTGGACTACAGAGTTATGGCCACATTCACAGAGCTCTACACAACACTGCTCGGCTTCGTTAACTTCCGCCTTTATCAGACTCTCAACCTTGTCTACCCGCCCAAGCTTGATGGACAAGGAGAGATCAGTCTCAAAGCAGAGTTTGAAGAAGATTACGCCCTGGAATCTGAAAGCTACACTGAGAAACTGTCAGCATTGAGTGCCAGTCTGGCTCGTATGGTGGCGtcagtggaggaggaggaggcagaGCTGGACCACTTCCCTACTGAAGGGGAGGACCAGGAGAAAATGGAGGTGAGGGAGAAGATGGAGCAGCAGCAGAGCAAACAGAAGAAACTCTTCGAAGGCCTCAAGTTTTTCCTAAACAGAGAAGTTCCCAGGGAATCGTTGGCGTTCGTGATCAGGTGTTTTGGTGGAGAGGTGTCTTGGGATAAATCCCTGTGCATCGGCAGCACGTATGAAGCCACAGACGAAACAATCACGCATCACATCGTGGACAGACCCAGCATGGACAAACAGTATATCAACAGATACTACATTCAGCCCCAGTGGGTGTATGACTCTGTCAATGCTAAGATACAGTTACCTGTGGAGGAGTATTTTCTGGGAGTCACACTGCCGCCTCATCTGTCACCGTTTGTGGAGGAGACTGAAGGAGATTATGTGCCGCCAGAGAAACTCAAGCTCATGGCCCTGCAGAGAGGAGAGAAACCACAAGCAGAAGAAGACGAGGAAGAGGAGGGAGAagaagaagaggatgatgaagaagATGAAGAGGACGATGAGCAGAGTGAGGATGAAGAGGAAGCAGAAGAAGAAGCAAATCTAGCTGAAATGGAGGAGAAGAGATCTCAGGGAAAGAGCCTCTCTGTAAAGGTGACTCCTGGTAAAGCCAAAGCTGAGAACCGTGCGAGAGCAGCAGAGGAGGAGAAAGCAGAGGAGAAGAGACTGGCCAttatgatgatgaagaagaaagAGAAATATCTCTATGACAAGATCATGTTCGGCAAGAAGAGAAAAGTCAGAGAGGCTAACAAACTGGCTGCCAAGAGGAAAGCTCACGATGACGCCAGCAAAGcagacaagaagaagaagaagaagaagtgctGAAGaacttatttttatatgtaataaatgtGCTTTTTCTCACTGTCAAGAGACTTTGAGGAGTGTTTCTTCTCATTTCAGCTCACTGCATcatttaaaaggacagttcacaaaaaaaaatcacatttcctCATTTACTTGAACTACTGGTTCTAACATTTTATGAGTTTcattcctctgttgaacacaaaagaagatattctgaagaatgttggaaaaaagcagccattgacatctataggaACATacaatactgtggaagtcaatggctgctgctttgcTAACATTCTTCacattatcttcttttgtgttcaacagaaggaagaaactgaACAGGTGAAAGGTGAGTGAATGATGAAAGAATTTATTTTTGAGTGACtgtctgtttaatggagattATCGATGATTCACTGAACTGAATCGATTTAGTTTTGCTAAACTGGTTTTCAGTGGATTTCATGCTGTATTTCTTGCCTGTTATCGTGTCTGTCTTATCGTTGACACATTTCTAATAAGCAAAAGATGATTATTGTTAA
>TCONS_00058607
AACTACATCATCTCCTCACGCTCCCTAAGAAAGgtttttctttccattaaGGGTATTTACTATCAGGCAGAGGTTTTGGGACAGACCATCACATGGATCGTACCATATCAGTTTGCCCATAATCATCCTACAGATGTGGACTACAGAGTTATGGCCACATTCACAGAGCTCTACACAACACTGCTCGGCTTCGTTAACTTCCGCCTTTATCAGACTCTCAACCTTGTCTACCCGCCCAAGCTTGATGGACAAGGAGAGATCAGTCTCAAAGCAGAGTTTGAAGAAGATTACGCCCTGGAATCTGAAAGCTACACTGAGGTAAAGGTTGATTTCTTTTCAATAACCCATGTCAGATGTAACTGTGTAGTGAATGACAtgt

Function

symbol description
pes Predicted to enable RNA binding activity. Acts upstream of or within exocrine pancreas development; oligodendrocyte differentiation; and regulation of cell cycle. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Is expressed in several structures, including alar plate midbrain region; digestive system; liver primordium; musculature system; and nervous system. Used to study Shwachman-Diamond syndrome. Orthologous to human PES1 (pescadillo ribosomal biogenesis factor 1).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0048709 oligodendrocyte differentiation biological_process
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0070545 PeBoW complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0043021 ribonucleoprotein complex binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-206 Predicted to enable RNA binding activity. Acts upstream of or within exocrine pancreas development; oligodendrocyte differentiation; and regulation of cell cycle. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of PeBoW complex and preribosome, large subunit precursor. Is expressed in several structures, including alar plate midbrain region; digestive system; liver primordium; musculature system; and nervous system. Used to study Shwachman-Diamond syndrome. Orthologous to human PES1 (pescadillo ribosomal biogenesis factor 1).

Ensembl:

ensembl_id ENSDARG00000018902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058606 False 2485 mRNA 0.45 15 12836913 12865386
TCONS_00058607 True 379 lncRNA 0.44 4 12845292 12851255

Neighbor

gene id symbol gene type direction distance location
XLOC_029912 pole coding upstream 32007 12743640 ~ 12804906 (+)
XLOC_029910 si:dkey-98f17.5 coding upstream 211076 12590403 ~ 12625837 (+)
XLOC_029911 dre-mir-22b coding upstream 226030 12610802 ~ 12610883 (+)
XLOC_029909 rfc5 coding upstream 287181 12528693 ~ 12549732 (+)
XLOC_029908 zgc:171242 coding upstream 319545 12515402 ~ 12517368 (+)
XLOC_029914 gal3st1a coding downstream 22874 12888260 ~ 12906542 (+)
XLOC_029915 ppil2 coding downstream 43395 12908781 ~ 12979986 (+)
XLOC_029916 BX470167.1 coding downstream 62052 12927438 ~ 12927554 (+)
XLOC_029917 NA coding downstream 127350 12992736 ~ 12999041 (+)
XLOC_029918 NA coding downstream 231081 13096467 ~ 13098456 (+)
XLOC_029907 NA non-coding upstream 810959 12025519 ~ 12025954 (+)
XLOC_029906 NA non-coding upstream 852029 11982586 ~ 11984884 (+)
XLOC_029904 NA non-coding upstream 921623 11909715 ~ 11915290 (+)
XLOC_029903 CU571331.1 non-coding upstream 936239 11900557 ~ 11900674 (+)
XLOC_029920 dre-mir-130c-2 non-coding downstream 423442 13288828 ~ 13288906 (+)
XLOC_029921 dre-mir-301b non-coding downstream 423967 13289353 ~ 13289433 (+)

Expression


Co-expression Network