XLOC_029921 (dre-mir-301b)


Basic Information

Item Value
gene id XLOC_029921
gene name dre-mir-301b
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13289353 ~ 13289433 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058615
AAGGTCTGTTGCTTTGACGATGTTGCACTACTGAACCATCTAATCAAGCAGTGCAATAGTATTGTCATTGCATTCGGCTTT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000082169

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058615 True 81 miRNA 0.41 1 13289353 13289433

Neighbor

gene id symbol gene type direction distance location
XLOC_029920 dre-mir-130c-2 coding upstream 447 13288828 ~ 13288906 (+)
XLOC_029919 CR933528.1 coding upstream 39487 13243446 ~ 13249866 (+)
XLOC_029918 NA coding upstream 190897 13096467 ~ 13098456 (+)
XLOC_029917 NA coding upstream 290312 12992736 ~ 12999041 (+)
XLOC_029915 ppil2 coding upstream 309367 12908781 ~ 12979986 (+)
XLOC_029922 NA coding downstream 1576 13291009 ~ 13292474 (+)
XLOC_029923 dre-mir-454b coding downstream 6874 13296307 ~ 13296422 (+)
XLOC_029924 dre-mir-130b coding downstream 9898 13299331 ~ 13299414 (+)
XLOC_029925 ydjc coding downstream 18706 13308139 ~ 13335624 (+)
XLOC_029926 ccl19a.1 coding downstream 64433 13353866 ~ 13392962 (+)
XLOC_029916 BX470167.1 non-coding upstream 361799 12927438 ~ 12927554 (+)
XLOC_029911 dre-mir-22b non-coding upstream 678470 12610802 ~ 12610883 (+)
XLOC_029932 NA non-coding downstream 313796 13603229 ~ 13616296 (+)
XLOC_029934 NA non-coding downstream 376385 13665818 ~ 13676027 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G35789 NA non-coding NC_053115.1 CM020912.1 3864156 ~ 3865329 (-)
striped catfish (Pangasianodon hypophthalmus) G355725 NA non-coding NC_047618.1 CM018564.1 14953216 ~ 14954814 (-)
tiger barb (Puntius tetrazona) G32540 NA non-coding NC_056703.1 CM032072.1 1762005 ~ 1762282 (+)