G35789


Basic Information

Item Value
gene id G35789
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3864156 ~ 3865329 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU47957
AGATTCCTACCCTACCATACgttatgtaacttaaaaataattacattatttgGCTCTTTTTAGCTGCCAGGAGTGAAAATGAGTAAtgtggtttcagaatgatgaaaaCATTTGGAGAAGAATTAGGATCTAGGCTCTACAGGACGATTATTTTTCTCgacaactattttgtttttcccTCAATGCTGTACAGATTTTTAGGCATTCTTTTATCAAATGGCTTAAAAGAAAATAGTGCACATAGCTGCTGTGAATGGAGCATTCAGGGACCTCCCCCTAGGTTTGGGctgagccccgaatgtttacaatgtctggctccgcccctggatactatgctgtatcgatttttccctcacccctagtctggctagtccatgcATCAACAAAGAcggtgcaacagaaaactccgattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccatagtcctcacaaatccaccggaggttagaacgccaacacaaaggaagaggaaggggacagacATCCATCCAACACCAGAACAATCCCGGATATGAACCGTCATCGATATAAACTACTGCTGCAGTATCTCAAACATCTGTACTTACACTTGCTATCCAGGGGAAACATCAGCTATATAGTATTTGCATTCAGGTACTCATCTGTCAGCGGTATATGCATCACATGAACTGGACCAATGAAAAACCCCTGCAAAATGTAAATGCTGAAAGCTTCTTCCAAAGCTTTTGACCATATCACACGGTCAGTTTTTCttatatgttatgttatttacagtatatttgcCATTAACCTGCTACACTTtttgtcacagaggagtgagtGAGCATGGCTGACCTGCTGTTCCCAGCCCTGCCCACATTGATACTTTTTTCACAGAggcatttatttgttttaaatttccAGGGTAGGCAGAGGCACCTCATCCAAAACTCTGGTGTTTAGTTACTTTTTAATATCATAGAGCCTTGCACATTCGGAAACATGAAATGTTTATCCATTATCATTCAATGGATGAGTTGTATTGTCAATTTTGTCTTGAAATTAGAGCCTCAGATGCAAAACCACTCACGGTTGTTATTGAATCATGCCATTAAAGCC

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47957 True 1131 lncRNA 0.41 2 3864156 3865329

Neighbor

gene id symbol gene type direction distance location
ap5b1 NA coding downstream 59091 3797651 ~ 3805065 (-)
p3h1 p3h1 coding downstream 109892 3729024 ~ 3754264 (-)
cldn19 cldn19 coding downstream 169448 3670690 ~ 3694708 (-)
si:ch211-117k10.3 NA coding downstream 556998 3294546 ~ 3307158 (-)
trnae-cuc_1 NA coding downstream 582130 3281955 ~ 3282026 (-)
efcc1 efcc1 coding upstream 185 3865514 ~ 3890690 (-)
acad9 acad9 coding upstream 48720 3914049 ~ 3939409 (-)
LOC120557786 NA coding upstream 638118 4503447 ~ 4504096 (-)
LOC120556788 LOC105888650,LOC101068541,LOC103395674,LOC107388332,LOC105896821 coding upstream 670182 4535511 ~ 4537113 (-)
LOC120557501 NA coding upstream 698947 4564276 ~ 4564891 (-)
G35768 NA non-coding downstream 90402 3773216 ~ 3773754 (-)
G35716 NA non-coding downstream 199421 3664499 ~ 3664735 (-)
G35713 NA non-coding downstream 220094 3643760 ~ 3644062 (-)
G35709 NA non-coding downstream 222737 3572384 ~ 3641419 (-)
G35697 NA non-coding downstream 312254 3516083 ~ 3551902 (-)
G35857 NA non-coding upstream 109825 3975154 ~ 3976051 (-)
G35875 hdac11 non-coding upstream 372264 4237593 ~ 4246047 (-)
G35918 NA non-coding upstream 604649 4469978 ~ 4470183 (-)
G35967 NA non-coding upstream 613621 4478950 ~ 4506202 (-)
G35975 NA non-coding upstream 645268 4510597 ~ 4513050 (-)
cfap57 NA other downstream 1729 3832108 ~ 3862427 (-)
nucks1a nucks1 other downstream 436923 3244233 ~ 3427233 (-)
cdk18 cdk18,LOC101468598,LOC102310375 other downstream 657393 3115239 ~ 3206763 (-)
G35647 LOC104965637,LOC100711663,LOC107385065,LOC102300449 other downstream 911049 2887992 ~ 2953107 (-)
G35645 NA other downstream 979975 2881881 ~ 2884181 (-)
iqsec1b iqsec1,LOC101485759,LOC104921976 other upstream 78895 3944224 ~ 4190732 (-)
apobec2a apobec2,LOC100696148,LOC102293474,LOC101160551,LOC102785934,LOC101475259 other upstream 541127 4406456 ~ 4422378 (-)
LOC120557507 NA other upstream 622458 4487787 ~ 4585445 (-)
LOC120556780 LOC106958509,LOC106963510,LOC107690788,LOC107671222,LOC107579420 other upstream 738789 4604118 ~ 4604494 (-)
ghrh ghrh,LOC108251004 other upstream 1041030 4906359 ~ 4914157 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G151104 NA non-coding CI01000028 null 9437321 ~ 9438026 (-)