G151104


Basic Information

Item Value
gene id G151104
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 9437321 ~ 9438026 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU171629
CGCATAGAAACCAAGCACATGCAACTCAATGCTAATGTAGCGCTGGGTGTACCTTAATTGTATTATTATTTTCTCTATAAATTAAGTAACTGTTTACAAACAAACGTTCGGCGACTGCACTTCCGGGTTATTTTCGCACCCAGCAAAGAACTGTGACGTGGCGTTTGTCGGGTTAAACAATTTAGATCGCAGCTGCTCTGACTGCAGACCTGTCTGACTTGTCACCTCTGGGGTCCGTACCTCGATTAATACATCTGAGATGAGTTGACAGATGATCTAAGCGCGATAATTAATCTCTGGCTAATGTCTAACGAATGTGCAGATTTGATTAAATATGTGGATTAAGATGTCTGATATCAGGGGCGGAGCCAGACATTGTAAACATTCGGGGCTTAGCCCAAATCTATTTTAATTTTCTGTTTACAGCTTTACTGACATGAAAGGAGCTTTGTTTTAGTATTCTTGAGTAAAGTTCATAAAATGTACATTATTTCCCACTGGAATTTGTAAAACTATGTTGGGTGTACCACCTTTAAGAAAATGTTGTAAATTTTAAGGTTAAATGCATCAATCTGGTGCACTTTGGAAGCTCAAAATTAAGAGCTTCAATCCATGTACAGTGTGCAAATTGACCAAAGAAACAGCATTGTACCTGGACATGAAAGAGCGTTCAAACATCTTTTTAGTTGTCATATAGAGTCTCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU171629 True 706 lncRNA 0.39 1 9437321 9438026

Neighbor

gene id symbol gene type direction distance location
CI01000028_09340262_09347554 NA coding downstream 89601 9339949 ~ 9347720 (-)
CI01000028_09331581_09331760 NA coding downstream 105561 9331339 ~ 9331886 (-)
CI01000028_09326092_09330464 NA coding downstream 106814 9325847 ~ 9330507 (-)
CI01000028_09224491_09231508 NA coding downstream 205476 9223805 ~ 9231845 (-)
CI01000028_09159785_09161996 NA coding downstream 274505 9159749 ~ 9162816 (-)
CI01000028_09449656_09453949 NA coding upstream 11077 9449103 ~ 9453949 (-)
CI01000028_09463027_09468717 NA coding upstream 24348 9462374 ~ 9468717 (-)
CI01000028_09469357_09494746 NA coding upstream 31317 9469343 ~ 9494746 (-)
CI01000028_09620918_09652565 NA coding upstream 181800 9619826 ~ 9652660 (-)
CI01000028_09686064_09687018 NA coding upstream 247872 9685898 ~ 9687020 (-)
G151070 NA non-coding downstream 17739 9412238 ~ 9419582 (-)
G151095 NA non-coding downstream 65706 9370650 ~ 9371615 (-)
G151094 NA non-coding downstream 67817 9369105 ~ 9369504 (-)
G151090 NA non-coding downstream 83140 9353900 ~ 9354181 (-)
G151089 NA non-coding downstream 83947 9352925 ~ 9353374 (-)
G151114 NA non-coding upstream 73393 9511419 ~ 9511970 (-)
G151288 NA non-coding upstream 365246 9803272 ~ 9803734 (-)
G151291 NA non-coding upstream 368799 9806825 ~ 9807053 (-)
G151292 NA non-coding upstream 369124 9807150 ~ 9807460 (-)
G151295 NA non-coding upstream 373093 9811119 ~ 9819353 (-)
G150328 NA other downstream 743578 8693398 ~ 8693743 (-)
G149923 NA other downstream 1413077 7974568 ~ 8024244 (-)
CI01000028_07527725_07535631 ARPP19 other downstream 1901578 7525962 ~ 7535743 (-)
G149474 NA other downstream 2204538 7229791 ~ 7232783 (-)
CI01000028_06969947_06983352 NA other downstream 2465424 6965064 ~ 6984084 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G35789 NA non-coding NC_053115.1 CM020912.1 3864156 ~ 3865329 (-)
tiger barb (Puntius tetrazona) G32540 NA non-coding NC_056703.1 CM032072.1 1762005 ~ 1762282 (+)