| Item | Value |
|---|---|
| gene id | G151070 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000028 |
| NCBI id | null |
| chromosome length | 9874160 |
| location | 9412238 ~ 9419582 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU171559 | False | 2082 | lncRNA | 0.35 | 4 | 9412238 | 9419523 |
| TU171560 | False | 1122 | lncRNA | 0.38 | 4 | 9413198 | 9419523 |
| TU171563 | False | 1121 | lncRNA | 0.38 | 5 | 9413198 | 9419523 |
| TU171571 | False | 1112 | lncRNA | 0.38 | 4 | 9413198 | 9419523 |
| TU171558 | False | 1073 | lncRNA | 0.39 | 4 | 9413247 | 9419523 |
| TU171562 | False | 1072 | lncRNA | 0.39 | 5 | 9413247 | 9419523 |
| TU171567 | False | 3232 | lncRNA | 0.37 | 4 | 9413247 | 9419523 |
| TU171569 | False | 1132 | lncRNA | 0.39 | 4 | 9413247 | 9419582 |
| TU171570 | True | 1606 | lncRNA | 0.37 | 2 | 9416354 | 9419523 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000028_09340262_09347554 | NA | coding | downstream | 64518 | 9339949 ~ 9347720 (-) |
| CI01000028_09331581_09331760 | NA | coding | downstream | 80478 | 9331339 ~ 9331886 (-) |
| CI01000028_09326092_09330464 | NA | coding | downstream | 81731 | 9325847 ~ 9330507 (-) |
| CI01000028_09224491_09231508 | NA | coding | downstream | 180393 | 9223805 ~ 9231845 (-) |
| CI01000028_09159785_09161996 | NA | coding | downstream | 249422 | 9159749 ~ 9162816 (-) |
| CI01000028_09449656_09453949 | NA | coding | upstream | 29521 | 9449103 ~ 9453949 (-) |
| CI01000028_09463027_09468717 | NA | coding | upstream | 42792 | 9462374 ~ 9468717 (-) |
| CI01000028_09469357_09494746 | NA | coding | upstream | 49761 | 9469343 ~ 9494746 (-) |
| CI01000028_09620918_09652565 | NA | coding | upstream | 200244 | 9619826 ~ 9652660 (-) |
| CI01000028_09686064_09687018 | NA | coding | upstream | 266316 | 9685898 ~ 9687020 (-) |
| G151095 | NA | non-coding | downstream | 40623 | 9370650 ~ 9371615 (-) |
| G151094 | NA | non-coding | downstream | 42734 | 9369105 ~ 9369504 (-) |
| G151090 | NA | non-coding | downstream | 58057 | 9353900 ~ 9354181 (-) |
| G151089 | NA | non-coding | downstream | 58864 | 9352925 ~ 9353374 (-) |
| G151087 | NA | non-coding | downstream | 60880 | 9351073 ~ 9351358 (-) |
| G151104 | NA | non-coding | upstream | 17739 | 9437321 ~ 9438026 (-) |
| G151114 | NA | non-coding | upstream | 91837 | 9511419 ~ 9511970 (-) |
| G151288 | NA | non-coding | upstream | 383690 | 9803272 ~ 9803734 (-) |
| G151291 | NA | non-coding | upstream | 387243 | 9806825 ~ 9807053 (-) |
| G151292 | NA | non-coding | upstream | 387568 | 9807150 ~ 9807460 (-) |
| G150328 | NA | other | downstream | 718495 | 8693398 ~ 8693743 (-) |
| G149923 | NA | other | downstream | 1387994 | 7974568 ~ 8024244 (-) |
| CI01000028_07527725_07535631 | ARPP19 | other | downstream | 1876495 | 7525962 ~ 7535743 (-) |
| G149474 | NA | other | downstream | 2179455 | 7229791 ~ 7232783 (-) |
| CI01000028_06969947_06983352 | NA | other | downstream | 2440341 | 6965064 ~ 6984084 (-) |