XLOC_029932


Basic Information

Item Value
gene id XLOC_029932
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13603229 ~ 13616296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061410
gtatgtttgttattgaagtcaataaaaaaaaaaataataaactaataaagtggccggtgagtgtatagcaAATCAACAAAGCCACAGACCGCCGGCCAGTGGAAAACGTCAGAGTAACTTTTGGACCTTCCGGCCCGCTATACCACTGTCGTATTCCAGGTGGTGTATTTAACTTTTTCCCACAAAGCGAGAAAGCTCTCATCACGGGTCAGATCACAGCAGCTTTATTTCGACATTCAGTCGGTGCAGGCTAGAGAAAGTGGAAGATTAAGTTCCGAAGACCGTCAAAGGTAAGATATGCGTGCATTTATATTACACCTTGCAATTCAATATGAAGGTGTGCTGCAGAATTGACATTG
>TCONS_00058632
ACATTCAGTCGGTGCAGGCTAGAGAAAGTGGAAGATTAAGTTCCGAAGACCGTCAAAGTGCTCAAAAAGAAGCATAATGGATTTTCTCGACAGTTTTTCAACACTATTGTCAACCAGCACAGGAATGTATGTGTGCTGTCAGAGCAAGCCACCAACGTCCTATCAGCTGGTCGCCACGGAACAACAGAATCCTGAGAGGTTCAGTAAAGTCAAGGTGTATAGATTTGTGgataatgaaaataagatctgcaTGGCGTTTTGCTTTAAGACAGGAAAGCACTCCGTTTTCCCTGTTATTACCCACAGTGATGAAGTCGATTTTAAGACTTTAACCTCAGATGAGATTGCTAAAGGAAAGGTTCAcaagtcatttttatttaaaccgGGTGAGGGAAGCAACAGTCCATTTATGAGCTTGAAATCTGTGTATAAACCCGACAAGTACCTGTGTGTTGATCAAAATGAAAGGAGCAAAGTGACCCTCTATTCAGAAGACATGCCGGATTTTAAAATTGATGACCTCTGTAAGCACAAAGaACTTCAAAGAACCAACTGCCAACCGCTAAGCAGGATCCTGGACCAGACAACCTCTTCTCGTGAGAAATCAGTGGAACCATCTAAGTGCTCTAACAGAAAAGGcaagaggATGAAGTTTTCATTGAAGAGCTGTGTCTCTTTTTGTCGCTGAACATTGTCTTCAACAGAAGGCTGTAATCTGCCTACATCATTTTTTTTCCTTGAGAAAAAAGGAAACCTGGACACTGACAATATATGTGGTATCTGAAACAGGAGCATCATTTATATTCTTACTGTAAAACAACCTGCATATTAAAGTTTTTTCACAATGAAAGTGtacttattttaaagaaaacttatCAAATCAATTCATAAAACATCCCTTTAACATGGTATTCTCAAGTGCTTGAATCATAACTGCTTAAGCAATTTCCTGACACTTTTGATTATGCTGAACTTTGACCTCTGACTGTATTGTTTTATTACAAAAGGCTGGGATGAGGTTGCAATAGTTCACCAAAGTAAATAGACACTTTTTAATAAccatataactgcaaaaaggatATTTTCTTTCAtgttctatattttattttaacaggaAATTGTCATTAggtctgcacaatatatcgtttcagcattgatgtatgtgcaatgtgatcattcacaatagtcataTCGCACGATCTGCATTGTCGAGTTCAGCTTCAGTTTATTCATCCCTCAGGAAATTTAAGTGCAATTATAGCTGATCAAGTACCATATTATTGAGCGATACTGAAGTTTAACCTTATTAGAGTGAAATAGtgcttgtttgctttgtttttaaggCCTACGACAGTATGATTTCAagtgcatttaaataatttgtgtacAAGAAATTATaactatttagctttttttaaattaattaacttaTACAGTTATACTCCCAAAAAGAAATCTGGACtaaaaaatcatcccaatcaatataaaatactacaataaggcacaagacgtgaTTGTTGCGtggtttgttgctattttcagaccagcgcaacctaaATTTTCtagttttgcaccacgttgtttaagtAGCAAATTCGTTTGAGCTGCTTTGTGCACTCATGGGtttctagaaaggaggtgtgttaaggcacattgttggtgaGTTGGTACTGTATTTTGAGGAACTCAAATAGATTGCGCAAATGACCAGCTGAAAGTTGTGCATCTTAAACACGTACACGTTGCTTAATATACAtagaatgtacagcaatacacaaatatctttacaaatgaaaaataattaaaggattaaattgttacaaaaacgattgttttctacataaatataaaaaccactggctccatctcggggggcttttttagtttattcatgaaaatatgcatttgttataatgttgttattattattattagtattattatttattatatgcacatttatatatgttttaataaaaaaaaaaaaacaagtttagatttgtccacctgtctggtTTTGGAAACGTTTGCATCACCATATgcggcataagaataggatgtgtgttttttGACCACCTTCattgttgtttattaatttgctggaaattagaactgcatttagaaatagttttgaaacaaatctttgtgcttaacaaactaaattaaatatgtaggctaatggatgtcttcagtggagtacgTACAACAGCGTTTCAGTTTAGAGGCCAAatagaggaggctcattctttctCCTCATGCTGCacatggtctgtttaactgttttcttgctagtgaagcgttcagtttttccacttacaaagtccgccaaataaatagcaaatgcactgtggcgtgatgcaactgactcttaagccgcctttccactgcacacgacatttggataGGACTGTCAGAATAccccccttgtggcagtcacaCAGAATGTTTTTAGTGTTGTCaagcaccatgggagagaagctgattctaGTGGTGTctaaaataaaggagtgcaaaaagagcctttattctccgtGTGTTCAATAatctttgaatgaatgaatgaatgaatactagaaactcatagaccactAAAAATTTTAGACGGAATTTGGAgacaacaaatacatttataatttttattactcGTTTATGaatccaaatgttttttttttttttaatatagactttttttctgaatcaaaaaataatgaaaaaatatccTATTTCACATCTCacgcacggacctgcttggacaacactggaatacatcaaaTCCGGTCGTctggtcgcatacggtctagtcgcaggatttcaaatatttcaatgtGTCCGCAGCTCAAATCAGATCTGAATTTTCCGCATAAGAAGATGATGGGAAGTCCCGGATTACTCTCTATTGGAAATGATTGACTTCCGGACTGTCGCTTGTCatatgcagtggaaaggcggctttaaaaggaatgggagatgaatgGTTTAATTCACgtaatgctcaaaacacacccataactcattaggagtataagcacaaccctgtttgaCCATGCGCCAGGGAGCAAACCATATTTTCAGACACACCCTCAATGCTTTTGCAACATGCACTTTAGACTTAAAGCCCTATGAGTTTATTCCAAGTTGACCTTTttagtcatctggtgaaataattatattcatatcgcagaaaaactaaatatcacaatgtccgatttttccaatatcatgcagccttaATTGTCACATTGTCAAATTATGATCGCCCTTTACTTCTTTCTAAAAAAGTttgcgttgttgtttttttcttctcttaaacactaaagaagatactttaaagaaagataaaaacctgtaaccattgacttccacagtatttgtgatccctactatgaaagtcagtggttacaggtttcggctttcttcagaataccttctttagtgttcaacagaataaactgACTGTTTTGGGAAAAGTAAAGGTTGAGCAAATTTTGGaaagaactgtccctttaacctCATGTCAGCACTGAGCAATAATACAGTAAGCAGTGCAGCCTAAATGTGCAGGAATGGCGTAATCAGTTATGAAACACAGTTTAAGCAATGCATGAAATGagagtaaatgattacagtaaTTTACATCACTGCTGAATGAATCAGCCGTTTGAGCGAATCCCATGAACATTACTGTGGGAGTTAAGGTGTGGGTTATTTTGGGTTGTGATGAaagaaatatgaatttaaaaatgcattatatttgtgtatatttattctCTTATTAAGTCTGGCTGTAAAGGCAAGACTATGTATTTCTTTTTTAGTGGTTGATTATTTttctaataacaacaataacatgcAAGATCTATTTTTTATGAATATGTCTATTAAATGTATGTCTATACCACTATTTTTTGATCGTATGTACTGGTTAACAAATGGGCAAATGCCTGagaaatgcctcacagcaagaagtttgctggtttgagtcccagctagaCCAGTtaacatttctatgtggagtttgcatgttctccctgtgttggtgtgggttttctccgggtgctctggattCCTTCACtgtccaaagacttgtggtacaggtgaattggataaaaaattattgctgtagtgtatgagtgtgtgtgaatatgagtgtgtatggatgtttcctggtactgggttgtagctggaagggcatcagctgtgtaaacataagctggaatagttggcggttcatcccactgaaggaaaatgaatggctGACAAATTTAGTGATTATAAAAAGAGCTCTCTTTGTGTGATTCAGtcacaaatgtacatttattttgtctCAAGGCTGTGTGTGAATTTTCTTTCAGCCTTTTCCATGTGTAAAATACCTTCCACAGCTATGCAACTGAATAAATGACGTAGAGATTTATTCAATAGGCATTTTACAAGCATCTGCTGCCAgtttcatttgattatttataataaaaatcaattatgtatttattatttactctcaATTTTACTAAGAAAATACCAAGAAGTTTCTcagattttcttttattattatagtttatattAAGCTACTGTAACCTATGGCTATTGGttttaaatgctgtattttatgtttaatcaaataaatgtcaTGTATGTTATATATTGTAGAAAGCTCTAAAgcaaaaaaaagtctttttttttctatatgaagttttttgtcattttacaaaataaaggCTTTGAACCGTCTTTTGTTGgtcatttttatttaactgaTGGTTTAAAGATGGTAAGATATAGAAACAACAGCAAAGaaattaatttactttaaactcattaaaagtgacagtaaaacatttataatgtttgtttatatacatttatac
>TCONS_00061411
ATAGATTTGTGgataatgaaaataagatctgcaTGGCGTTTTGCTTTAAGACAGGAAAGCACTCCGTTTTCCCTGTTATTACCCACAGTGATGAAGTCGATTTTAAGACTTTAACCTCAGATGAGATTGCTAAAGGAAAGGTTCAcaagtcatttttatttaaaccgGGTGAGGGAAGCAACAGTCCATTTATGAGCTTGAAATCTGTGTATAAACCCGACAAGTACCTGTGTGTTGATCAAAATGAAAGGAGCAAAGTGACCCTCTATTCAGAAGACATGCCGGATTTTAAAATTGATGACCTCTGTAAGCACAAAGGTAATTTTGGTAAATATGTGCAACTGGAACGCTGATTATGAAACTTTTTGCATATGGTGTGGGGAAATTTGTACATTAAGATGATCATCcatctattgattttttttaatccatagaACTTCAAAGAACCAACTGCCAACCGCTAAGCAGGATCCTGGACCAGACAACCTCTTCTCGTGAGAAATCAGTGGAACCATCTAAGTGCTCTAACAGAAAAGGGTAACTATATTAGTAGGGTTTGCTTTTATACAGAGTAGCTCCATACGAGTGGAATATTGCTGTAAATATGTTGAGATATTCCAACTTCAttcaattttatttgtatagcacttttttacaatagttgttgttttaaagcagctttataaAAGATGCATTATTGTGTTACAATCAAATtcggaaaagttaaggttattagttaccataactttattactTACTAATcactttaactaattaattagCAACTAAtggcttttaacagttaaagg

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0042133 neurotransmitter metabolic process biological_process
GO:0009583 detection of light stimulus biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0005882 intermediate filament cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117407

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061410 False 359 lncRNA 0.42 2 13603229 13603662
TCONS_00058632 False 4865 lncRNA 0.35 6 13603536 13616296
TCONS_00061411 True 809 lncRNA 0.35 2 13609396 13610301

Neighbor

gene id symbol gene type direction distance location
XLOC_029931 ckap2l coding upstream 42155 13549603 ~ 13561074 (+)
XLOC_029930 cnnm4b coding upstream 62177 13472234 ~ 13541052 (+)
XLOC_029929 sec14l8 coding upstream 133922 13427826 ~ 13469307 (+)
XLOC_029928 tctn2 coding upstream 175880 13394543 ~ 13427349 (+)
XLOC_029926 ccl19a.1 coding upstream 210267 13353866 ~ 13392962 (+)
XLOC_029933 h2az2a coding downstream 30992 13647288 ~ 13652687 (+)
XLOC_029934 NA coding downstream 49522 13665818 ~ 13676027 (+)
XLOC_029935 hk2 coding downstream 254044 13870340 ~ 14004206 (+)
XLOC_029936 NA coding downstream 482046 14098342 ~ 14121733 (+)
XLOC_029937 NA coding downstream 711036 14327332 ~ 14330018 (+)
XLOC_029924 dre-mir-130b non-coding upstream 303815 13299331 ~ 13299414 (+)
XLOC_029923 dre-mir-454b non-coding upstream 306807 13296307 ~ 13296422 (+)
XLOC_029922 NA non-coding upstream 310755 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b non-coding upstream 313796 13289353 ~ 13289433 (+)
XLOC_029920 dre-mir-130c-2 non-coding upstream 314323 13288828 ~ 13288906 (+)
XLOC_029938 BX927201.1 non-coding downstream 1025856 14642152 ~ 14642269 (+)
XLOC_029939 NA non-coding downstream 1349521 14965817 ~ 14966350 (+)

Expression


Co-expression Network