XLOC_029933 (h2az2a)


Basic Information

Item Value
gene id XLOC_029933
gene name h2az2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13647288 ~ 13652687 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058633
ATTGTTCCTCCGAGTCAAGAGGCGGATAGGCTGTAGCCAAACCTCCCAGGCTCCCATTCAAAGTAATACATCGCTGAAATGGCAGGTGGAAAAGCAGGTAAAGACAGTGGCAAAGCCAAGGCGAAAGCAGTGTCTCGCTCGCAAAGAGCTGGTCTTCAGTTTCCAGTGGGACGAATCCACAGGCACTTGAAGACACGCACTACAAGCCATGGTCGAGTAGGAGCAACAGCAGCCGTTTACAGCGCAGCCATTCTTGAATATCTCACAGCTGAAGTTTTGGAGTTGGCAGGAAATGCTTCAAAAGACCTGAAGGTGAAGCGCATCACTCCTCGACATTTACAGCTGGCCATTCGAGGAGATGAGGAGCTCGATTCCCTTATCAAGGCCACTATTGCTGGAGGAGGTGTGATTCCACACATCCACAAGTCTCTGATTGGTAAGAAGGGCCAGCAGAAAACCGCATAGTTCCCATCAGGATCTAAGTGCAGACATGACTCAAGGACTTGCATTTGGGATGTGAATCGATAAGCTTGTGTTCATCctttaatccatttttttttttcccccatcccTTATTTTTAAGTTAATATAAATGTTATACTAGCTAACCACAGgtgtttttgttagttttgtgttaatgttatatataaatatcgcCAAATTAGAATGGCAAATAATCCCCGTCCCACTGAAGCCAGGTGTTTTAGAGACCAACAGGAAGTGTCTGATCTTTCCTGCCATGACTGTGGAAGTGTTTGTTCAATTGGCCAGAGCCGTGGAGCTGTTTTATACTGaagtgcaaatgataaactttttatataaaacCAAAAA
>TCONS_00058634
GCCAAACCTCCCAGGCTCCCATTCAAAGTAATACATCGCTGAAATGGCAGGTGGAAAAGCAGGTAAAGACAGTGGCAAAGCCAAGGCGAAAGCAGTGTCTCGCTCGCAAAGAGCTGGTCTTCAGTTTCCAGTGGGACGAATCCACAGGCACTTGAAGACACGCACTACAAGCCATGGTCGAGTAGGAGCAACAGCAGCCGTTTACAGCGCAGCCATTCTTGAATATCTCACAGCTGAAGTAAGATCTCCACACATTATTTCTGTCACAAGTATTGATATTTTTAAGTATCGAAATATCCACACTTTCAAAACACTTGATGCATGGTGTTATGACTTATTGCAGTTAAGTCTATCAgtttcatttttcatttgcaGAAATAAAAGCAACATCTTATGTCATGGTTGATGCTGCAAACTTTCTGCACATTTCATGTTTGTTCAGAATAAAGATCAGACACAAGATAAAGAAAACTTGGTACTCTTACCCTGTTATTAATTTTAATCTGTACATTAATTACTGATTGTCTTCaattattttgacttatttcAGTTAGGCTTCTAATTTATCATTGAGTCTAAATTTAGAATTAAGGATTGTGTTAACCATTACATGAGTGCTACATTAAATTCCAAATAACTGATGCAAAGCAACAAATTGCACtatttattactactactactactactcataatagtaataacaaaaatacatattattattattattattattatcatcatctttttttttttttgtagtattttt

Function

symbol description
h2az2a Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in ovarian follicle. Orthologous to human H2AZ2 (H2A.Z variant histone 2).

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006342 chromatin silencing biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020717-1 Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in ovarian follicle. Orthologous to human H2AZ2 (H2A.Z variant histone 2).

Ensembl:

ensembl_id ENSDARG00000068820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058633 False 831 mRNA 0.44 5 13647288 13652687
TCONS_00058634 True 766 mRNA 0.34 3 13647323 13650076

Neighbor

gene id symbol gene type direction distance location
XLOC_029932 NA coding upstream 30992 13603229 ~ 13616296 (+)
XLOC_029931 ckap2l coding upstream 86214 13549603 ~ 13561074 (+)
XLOC_029930 cnnm4b coding upstream 106236 13472234 ~ 13541052 (+)
XLOC_029929 sec14l8 coding upstream 177981 13427826 ~ 13469307 (+)
XLOC_029928 tctn2 coding upstream 219939 13394543 ~ 13427349 (+)
XLOC_029934 NA coding downstream 13131 13665818 ~ 13676027 (+)
XLOC_029935 hk2 coding downstream 217653 13870340 ~ 14004206 (+)
XLOC_029936 NA coding downstream 445655 14098342 ~ 14121733 (+)
XLOC_029937 NA coding downstream 674645 14327332 ~ 14330018 (+)
XLOC_029938 BX927201.1 coding downstream 989465 14642152 ~ 14642269 (+)
XLOC_029924 dre-mir-130b non-coding upstream 347874 13299331 ~ 13299414 (+)
XLOC_029923 dre-mir-454b non-coding upstream 350866 13296307 ~ 13296422 (+)
XLOC_029922 NA non-coding upstream 354814 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b non-coding upstream 357855 13289353 ~ 13289433 (+)
XLOC_029939 NA non-coding downstream 1313130 14965817 ~ 14966350 (+)

Expression


Co-expression Network