XLOC_029928 (tctn2)


Basic Information

Item Value
gene id XLOC_029928
gene name tctn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13394543 ~ 13427349 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058624
TGATGTTGTCTCCACAAGGTCATTAGAAACACAAAAACACTACCGCTGAACGACACCGCGAGGCGCTGATTAACTTATCACGTCTGTGTTGAACGTCATCTTGCTACACGAAGAAGAGGATTCACTGCCTTTACCAACGCGGTTATTATGAGACACTTTTCATCTTTCCATATTGGGTTTTATTTCACATGTATAATATTTACGTTCTTAAATGACGGAACAGTCTGTAATGTTGTGTTTCAGCCTGCGTTCATTCAGGCATCTGGTCCAAAAATATCATCTTTTCTGGTTGGAAACGTGTCGGGCATTTCATTCAGTCTTAGTGCTGTTTCTTCGTCAAATGCAACAGGTAGCATCCTTCCACCATCCTGTTTGCCGGTTTATCAACCACAGTGGAATCTTTCCTATGAATTAATTGGGAAGAATGCCTTTCTGGTGCACGTGAGTCTGAACCGCAGTCTCCAGCTGTGTGGGAATGAAACCTCCATCTCGGACTGCTGTCTGGAGTTGCTTTGTGTCCAGGAGACTCTGCTTGTGTCTGCTTGTGTGGATGAAACACCTAAAGCCTCCCTCATCATACAGACCCAGATTTATGCCCAGATCCACCCCAGTAAACCTCCATCTGtaaataaaACAGTCATTCCCAACCAAGTATTTCAGCCGCTCGGCCAGTGCCCGTGTGACGTTTCTCCAGGCGAGTGTGACATACGCTGCTGCTGTGATCAGGACTGTACTCGGGAAGTCCTGGGGCTCTTTGCAACTCAGTGTTTTCTTGGACCGTACGGGGGAAGTTTCAGTCCTGTTCCAGAGTATCAGTGTTCTGCTCAGCCTTCTGAAAATGACCCTGATTGGTTCCCCTTCCTCTGTGTCATCTCGCCCTCCTACAACAACCCTTTTCTGGGACTTTTTTATCATGGTGGAACTGTctctCCAAAACCAAGTCCATCATTCCAAGCCCCACAGATGACAGCTACTCTTCCCCCCATAAACTACCGCCAAGGGGATCCAATATTCACCAAGGATGACAAATACTTCACCATCCCACAGAACACGGGAACAGGTCAGTGTGTGGAAAACGCACCAGTGGCATTTTTGGAGAACTTTGAGTTCCAGTGTGTGAGGAGGCTTCAGTTTTGTCCATCTCCATCTGATGACCTGAGGGTGGATGTTAAAGATGGACAGGGAGGTGTGATAGCGGTCAGTGTTGTGGATGATGTAGCTGACAACATCAGATTATTTGTGTCAAATTCTCCTGAGGTCACTTCAGAGCCACAACAGTGTGATAATGTCGTTGTGTCCTTGCGTTACACTTTTTACTGGAGAGAGAACGGTCTCACCGCCATTGCTGTGACACGAACCACTGCAAACATCACTGTACCTGtaactTTGACAAGTAGATATTCTGCTGTGTTTGTGAATGGAAACGAGACCTCTCAGTCGTACTCCGGTTACCAAGTGATGAGGCCCGTGATTGGTGGTGTTTTGGACTCTGAAACAGGAGTTGTACAGAGGACCCAGATCAGTCTGTGGCAGCCAGCTGGAGATGGCCTGTGCTCTTCTGCTAAACTGAGATCAGCTCTGTTTGGGATCAACTCCACATCAGGCTGTGTGGTTCCTGTGAGTTTAATGAATATGACACAGTGCAGTCTGTTAAGAGAAACGCTGCGTTCTCTTCTAGATGGATTAGTGACCGCTACACTCGTCTCCACTTCAGGAAAACCAGACTTTTACAATTTGACGGACTGGGTCAACATTACTACATCGCAGCAGAACCAGAGTCAGTCAGCAGAGGGCAGCAAAGGAGAGTGTTCAGCCGTGCCCACTCACCTCCACATCCACGTGAAGAGCAGCATCATGGAAATAGTTCAGGGTGTTCCTCAAATGTTTATCCAGTCCATGCAGATCAGTTTCATAGAGAGGACATGGAAGATTGAGTGTGGTGTGGGAATGATGGACCCCTGTTTGAACCCAGAGCTCATGCAAAATTTCCCAGTCACCTCTTCAGTGACGTTTACTGACCTTTCTCTTTATTCACAACCACCTAGATCCAGGTTCAGCATTAACTTCACAGAGTTTGACTGTGACAGGAATGATGTTTGCTGGCCTGAACTGGCCTTTCCTTTCACAACATACTACACTGGCGAGCCTTATTCTGAGGCTCTGGCTAAAGGTCTGACTCTTGTATTCTTCTTCATCGCGGCGTCCGTTTTGGGAACCCCGTGGAGGCAAATCCGACAGGCCTGGAGGAATGCTTGATCAGGACAGAGAAAACTGAGCTGTAAATAACTGTGaacatacaattatttatttttcttttctagtTTGTACATTTTCCtacattatttataaagtttTGTCGATTGAACTAtgctttttaaatgaaattgtgaatacaaaataaaaatacatgttttatatgtaaaatatccttctgtgtgtgtgtgtttgtgtgtttgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacagaggCTGAGATGTCATGGATAAAATTCAAGTATTCTATAGTCGAAgtaattcatgtatttattagTATAAGTTACaatattaattgcatttttattatcaAAGGAAAAATTGTAATACGTTTTCTGGTTTGTAAAACGTAATGCATTACAAATTATCTTTTGCGAAATGTAGCTAACAAGGTATCTAACAAactcacaataataataataataatgaataataactaCTAAAAGTaatgacatttattattatattaaacattattataaacacatgcaccaataatatctttttaatacttataatttttgtattattatatataacttATTTTTCATTATAATTCTTTTC
>TCONS_00058625
GAAGAAGAGGATTCACTGCCTTTACCAACGCGGTTATTATGAGACACTTTTCATCTTTCCATATTGGGTTTTATTTCACATGTATAATATTTACGTTCTTAAATGACGGAACAGTCTGTAATGTTGTGTTTCAGCCTGCGTTCATTCAGGCATCTGGTCCAAAAATATCATCTTTTCTGGTTGGAAACGTGTCGGGCATTTCATTCAGTCTTAGTGCTGTTTCTTCGTCAAATGCAACAGGTAGCATCCTTCCACCATCCTGTTTGCCGGTTTATCAACCACAGTGGAATCTTTCCTATGAATTAATTGGGAAGAATGCCTTTCTGGTGCACGTGAGTCTGAACCGCAGTCTCCAGCTGTGTGGGAATGAAACCTCCATCTCGGACTGCTGTCTGGAGTTGCTTTGTGTCCAGGAGACTCTGCTTGTGTCTGCTTGTGTGGATGAAACACCTAAAGCCTCCCTCATCATACAGACCCAGATTTATGCCCAGATCCACCCCAGTAAACCTCCATCTGtaaataaaACAGTCATTCCCAACCAAGTATTTCAGCCGCTCGGCCAGTGCCCGTGTGACGTTTCTCCAGGCGAGTGTGACATACGCTGCTGCTGTGATCAGGACTGTACTCGGGAAGTCCTGGGGCTCTTTGCAACTCAGTGTTTTCTTGGACCGTACGGGGGAAGTTTCAGTCCTGTTCCAGAGTATCAGTGTTCTGCTCAGCCTTCTGAAAATGACCCTGATTGGTTCCCCTTCCTCTGTGTCATCTCGCCCTCCTACAACAACCCTTTTCTGGGACTTTTTTATCATGGTGGAACTGTctctCCAAAACCAAGTCCATCATTCCAAGCCCCACAGATGACAGCTACTCTTCCCCCCATAAACTACCGCCAAGGGGATCCAATATTCACCAAGGATGACAAATACTTCACCATCCCACAGAACACGGGAACAGGTCAGTGTGTGGAAAACGCACCAGTGGCATTTTTGGAGAACTTTGAGTTCCAGTGTGTGAGGAGGCTTCAGTTTTGTCCATCTCCATCTGATGACCTGAGGGTGGATGTTAAAGATGGACAGGGAGGTGTGATAGCGGTCAGTGTTGTGGATGATGTAGCTGACAACATCAGATTATTTGTGTCAAATTCTCCTGAGGTCACTTCAGAGCCACAACAGTGTGATAATGTCGTTGTGTCCTTGCGTTACACTTTTTACTGGAGAGAGAACGGTCTCACCGCCATTGCTGTGACACGAACCACTGCAAACATCACTGTACCTGtttttttttcttcagtaactTTGACAAGTAGATATTCTGCTGTGTTTGTGAATGGAAACGAGACCTCTCAGTCGTACTCCGGTTACCAAGTGATGAGGCCCGTGATTGGTGGTGTTTTGGACTCTGAAACAGGAGTTGTACAGAGGACCCAGATCAGTCTGTGGCAGCCAGCTGGAGATGGCCTGTGCTCTTCTGCTAAACTGAGATCAGCTCTGTTTGGGATCAACTCCACATCAGGCTGTGTGGTTCCTGTGAGAGAAACGCTGCGTTCTCTTCTAGATGGATTAGTGACCGCTACACTCGTCTCCACTTCAGGAAAACCAGACTTTTACAATTTGACGGACTGGGTCAACATTACTACATCGCAGCAGAACCAGAGTCAGTCAGCAGAGGGCAGCAAAGGAGAGTGTTCAGCCGTGCCCACTCACCTCCACATCCACGTGAAGAGCAGCATCATGGAAATAGTTCAGGGTGTTCCTCAAATGTTTATCCAGTCCATGCAGATCAGTTTCATAGAGAGGACATGGAAGATTGAGTGTGGTGTGGGAATGATGGACCCCTGTTTGAACCCAGAGCTCATGCAAAATTTCCCAGTCACCTCTTCAGTGACGTTTACTGACCTTTCTCTTTATTCACAACCACCTAGATCCAGGTTCAGCATTAACTTCACAGAGTTTGACTGTGACAGGAATGATGTTTGCTGGCCTGAACTGGCCTTTCCTTTCACAACATACTACACTGGCGAGCCTTATTCTGAGGCTCTGGCTAAAGGTCTGACTCTTGTATTCTTCTTCATCGCGGCGTCCGTTTTGGGAACCCCGTGGAGGCAAATCCGACAGGCCTGGAGGAATGCTTGATCAGGACAGAGAAAACTGAGCTGTAAATAACTGTGaacatacaattatttatttttcttttctagtTTGTACATTTTCCtacattatttataaagtttTGTCGATTGAACTAtgctttttaaatgaaattgtgaatacaaaataaaaatacatgttttatatg

Function

symbol description
tctn2 Acts upstream of or within determination of left/right symmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 24 and Meckel syndrome 8. Orthologous to human TCTN2 (tectonic family member 2).

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:1904491 protein localization to ciliary transition zone biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0036038 MKS complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-751 Acts upstream of or within determination of left/right symmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 24 and Meckel syndrome 8. Orthologous to human TCTN2 (tectonic family member 2).

Ensembl:

ensembl_id ENSDARG00000035633

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058624 False 2885 mRNA 0.43 18 13394543 13427349
TCONS_00058625 True 2292 mRNA 0.46 18 13394652 13426883

Neighbor

gene id symbol gene type direction distance location
XLOC_029926 ccl19a.1 coding upstream 1581 13353866 ~ 13392962 (+)
XLOC_029927 ccl19a.2 coding upstream 18119 13373593 ~ 13376424 (+)
XLOC_029925 ydjc coding upstream 58919 13308139 ~ 13335624 (+)
XLOC_029924 dre-mir-130b coding upstream 95129 13299331 ~ 13299414 (+)
XLOC_029923 dre-mir-454b coding upstream 98121 13296307 ~ 13296422 (+)
XLOC_029929 sec14l8 coding downstream 477 13427826 ~ 13469307 (+)
XLOC_029930 cnnm4b coding downstream 44885 13472234 ~ 13541052 (+)
XLOC_029931 ckap2l coding downstream 122254 13549603 ~ 13561074 (+)
XLOC_029932 NA coding downstream 175880 13603229 ~ 13616296 (+)
XLOC_029933 h2az2a coding downstream 219939 13647288 ~ 13652687 (+)
XLOC_029922 NA non-coding upstream 102069 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b non-coding upstream 105110 13289353 ~ 13289433 (+)
XLOC_029920 dre-mir-130c-2 non-coding upstream 105637 13288828 ~ 13288906 (+)
XLOC_029934 NA non-coding downstream 238469 13665818 ~ 13676027 (+)
XLOC_029936 NA non-coding downstream 670993 14098342 ~ 14121733 (+)
XLOC_029937 NA non-coding downstream 899983 14327332 ~ 14330018 (+)
XLOC_029938 BX927201.1 non-coding downstream 1214803 14642152 ~ 14642269 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location