XLOC_029929 (sec14l8)


Basic Information

Item Value
gene id XLOC_029929
gene name sec14l8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13427826 ~ 13469307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058626
ATTTCTGCTGCACTCGTGGCGACATGAGCGGAAGGGTTGGAGATCTGAGCGTGAAGCAAGCCGAAGCTTTGGCCCAGTTTCGGGAAAAAGTTCAGGATGTCCTGCCTCAGTGTCCTTCCCAGAGTGACCACTTTCTGCTCAGATGGCTGAGAGCCAGAAACTTCAATTTACAGAAATCCGAGGCCATGCTGCGCAAGCATATAGAGTTTCGGAAACACATGAAAGTTGACACCATCACAACCGAGTGGCAGGTGCCAGAGGTCATAGATAAGTATCTTTCTGGTGGCATGTGTGGACACGACCGTGAAGGAAGCCCGGTCTGGTATGATGTCATCGGGCCGCTGGACCCAAAGGGTTTGATGCACTCAGCCTCTAAGCAGGACTTAATCAAGTCTAAAGTCAGGGACTGCGAGATTCTGCAGAAAGATTGTGATCGACAGAGCGAACGGTTGGGTAGGAACATTGAATCCATTACTATGGTCTATGACTGTGAAGGTCTGGGAATGAAGCACTTATATAAGCCTGCTATAGAGACTTATGGAGAGgtTCTCACTATGTTTGAAGATAATTATCCAGAGGGACTTAAGCGATTATTTGTCATCAAAGCACCTAAACTGTTTCCTGTGGCGTACAATCTGGTGAAGCACTTTCTGAGCGAAGACACACGCCGTAAGGTCATCGTCCTTGGATCAAACTGGCAGGAGGTTTTACAGAAGTACATCGACCCCGAGGAGCTGCCCGCATATTATGGAGGAAAACTGACCGATCCTGATGGGGACCCCAAATGTAGAACTAGGATTACGTTCGGGTCAGAGATTCCCAAGTCCTACTATGTCCGAGACTCCATTAAAGTGGACTATGAACAGTCTGTGAGTATCGGCCGGGGCTCGTCTCATCAGATGGAATATGAGCTTATCGCACCAAACTGTGCACTAAGGTGGCAGTTCTCCTGTGATGGGGCAGATATAGGGTTTGGGGTGTATCTGAAGAAGAAGATGGGAGAGAGGATGAAGGCTGGTGAAATGAGGGAAATTGTGCCGAATCAGCGTTACAACGCACACCTGGTTCCTGAAGATGGCTCACTCACCTGCCCAGAACCAGGAGTCTATGTCCTGCGATTTGACAACACATACAGCGTCTTCCAGTCCAAAACGGTCAAATTTACAGTGGAGGTCCTCCTACCCAGTCAAGTCAACCAATCAGACAACTAGAAATGACGGAAACCAGAAAGAAGCTGCCAATAACTTGAGATTATAAAGAAACGTCAGCTCTTAGGCATAACAAACTGATCACAAATCTGTTGTTCATATTAAAGGATAAGAGATTAATAATGCTGCTTTCATATaaacaaactgaccaatcactgCATCAAATGAACAGTGGGCTGAAATGTACATTTCgagatttaaagggacagtacacccaaaaatgaaataacatgtcctcatttactcacacttaagtgGTTCTAAAATGGAGAATTTTTAGGGGGAAAAACATTGTGACATCCATACTAGGAACaaaagtactatggaagtcaatggctgtttttccccaGGCATTTTCCAACCtatctttatttgttttcaacagaagatagaaactcaaactggtttaaaGCAAgcataaatgatggcagaatgtatgttttgggtgaactatcacctTAAGTCCATCGTCCAGCAACATATCTGGATTCTGACTTCAGTGCCAGTGTAATTCCTTACGTTTATTTCTCTGAGATGAAGCTGTTATCACGTATAAATGAAGTGTTTGTCATTGAACTTATCAGTGAACTGTGCTTTATCAAGTGTAACAAAAAATCCTAGACTGAAACCGTCTCGGTGTATATTATTCAGCAAGATCTTACGTGCTTATCGCTTAACTGATTTAgataatttaatcaatttaattccTTTTGATAAtcaattcattttaataatgagCTCTGAGTCTGTGGAATTTGCTTCTTTTACAGTGTGATAATATGACAgagtatattgttattattataatgttttgcttttgttaTTGACGCACACAAATGTGATACAGCAGAGTATgaagtttttatttgtattgtttctaATTTAATTCACGATTgccttaaatttaaaattaatgtcGTGAACTTTTGCTTAGTAAGGAGATGTTTTACCTCAGGTCCTTGTGTTTACAATAACAATGTCCATATTTGATTGCAGCAGCATTAATGTTGGGTCAGTGCATTTCTACAATGGCCATGTTGAATTTCATGTCTCTTTTATTGATTTTGTAATATTGGTGTAATTTATGAGTGATGTTGTGttgattttgattaatttacTAATCAAATAGAGACATTACAACAGCA
>TCONS_00058627
TTGAGCTCAAAATGTAGTCTAATAACCCTGTATGTAGtttcatttcttttaaaataagcaTGTGAAGGCAATGTGTGTTCCTTATTAAAAACCTCTTTGATTTGGCCTGCTTTCTTTGTCTGTTTTGTTCCTTCTGTTTGTTTAAAGAATCCTTACTAACACTAAAATGCCAGACTTTTATCTTTTGCACTCATGACGCTTCTGTAAGTTTAATCCTCCTTTGTTTTTCCGTTTTCTTTTCTGATTTATTATTTCCAGCTCATCTTAACCGACCACATGTTAAACAAATGTTTCTGTTATTTCAGATTACGTTCGGGTCAGAGATTCCCAAGTCCTACTATGTCCGAGACTCCATTAAAGTGGACTATGAACAGTCTGTGAGTATCGGCCGGGGCTCGTCTCATCAGATGGAATATGAGCTTATCGCACCAAACTGTGCACTAAGGTGGCAGTTCTCCTGTGATGGGGCAGATATAGGGTTTGGGGTGTATCTGAAGAAGAAGATGGGAGAGAGGATGAAGGCTGGTGAAATGAGGGAAATTGTGCCGAATCAGCGTTACAACGCACACCTGGTTCCTGAAGATGGCTCACTCACCTGCCCAGAACCAGGAGTCTATGTCCTGCGATTTGACAACACATACAGCGTCTTCCAGTCCAAAACGGTCAAATTTACAGTGGAGGTCCTCCTACCCAGTCAAGTCAACCAATCAGACAACTAGAAATGACGGAAACCAGAAAGAAGCTGCCAATAACTTGAGATTATAAAGAAACGTCAGCTCTTAGGCATAACAAACTGATCACAAATCTGTTGTTCATATTAAA

Function

symbol description
sec14l8 Enables GTP binding activity; GTPase activating protein binding activity; and GTPase activity. Acts upstream of or within with a positive effect on angioblast cell migration from lateral mesoderm to midline. Acts upstream of or within Wnt signaling pathway, calcium modulating pathway; positive regulation of epiboly involved in gastrulation with mouth forming second; and regulation of convergent extension involved in axis elongation. Is extrinsic component of plasma membrane. Is expressed in blastomere; posterior cardinal vein; trunk vasculature; vascular cord; and vasculature. Orthologous to several human genes including SEC14L2 (SEC14 like lipid binding 2) and SEC14L3 (SEC14 like lipid binding 3).

GO:

id name namespace
GO:1901232 regulation of convergent extension involved in axis elongation biological_process
GO:0007223 Wnt signaling pathway, calcium modulating pathway biological_process
GO:1904088 positive regulation of epiboly involved in gastrulation with mouth forming second biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005515 protein binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0032794 GTPase activating protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-180 Enables GTP binding activity; GTPase activating protein binding activity; and GTPase activity. Acts upstream of or within with a positive effect on angioblast cell migration from lateral mesoderm to midline. Acts upstream of or within Wnt signaling pathway, calcium modulating pathway; positive regulation of epiboly involved in gastrulation with mouth forming second; and regulation of convergent extension involved in axis elongation. Is extrinsic component of plasma membrane. Is expressed in blastomere; posterior cardinal vein; trunk vasculature; vascular cord; and vasculature. Orthologous to several human genes including SEC14L2 (SEC14 like lipid binding 2) and SEC14L3 (SEC14 like lipid binding 3).

Ensembl:

ensembl_id ENSDARG00000059729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058626 False 2353 mRNA 0.41 12 13427826 13469307
TCONS_00058627 True 822 lncRNA 0.41 3 13461112 13468268

Neighbor

gene id symbol gene type direction distance location
XLOC_029928 tctn2 coding upstream 477 13394543 ~ 13427349 (+)
XLOC_029926 ccl19a.1 coding upstream 34864 13353866 ~ 13392962 (+)
XLOC_029927 ccl19a.2 coding upstream 51402 13373593 ~ 13376424 (+)
XLOC_029925 ydjc coding upstream 92202 13308139 ~ 13335624 (+)
XLOC_029924 dre-mir-130b coding upstream 128412 13299331 ~ 13299414 (+)
XLOC_029930 cnnm4b coding downstream 2927 13472234 ~ 13541052 (+)
XLOC_029931 ckap2l coding downstream 80296 13549603 ~ 13561074 (+)
XLOC_029932 NA coding downstream 133922 13603229 ~ 13616296 (+)
XLOC_029933 h2az2a coding downstream 177981 13647288 ~ 13652687 (+)
XLOC_029934 NA coding downstream 196511 13665818 ~ 13676027 (+)
XLOC_029923 dre-mir-454b non-coding upstream 131404 13296307 ~ 13296422 (+)
XLOC_029922 NA non-coding upstream 135352 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b non-coding upstream 138393 13289353 ~ 13289433 (+)
XLOC_029920 dre-mir-130c-2 non-coding upstream 138920 13288828 ~ 13288906 (+)
XLOC_029936 NA non-coding downstream 629035 14098342 ~ 14121733 (+)
XLOC_029937 NA non-coding downstream 858025 14327332 ~ 14330018 (+)
XLOC_029938 BX927201.1 non-coding downstream 1172845 14642152 ~ 14642269 (+)

Expression


Co-expression Network