XLOC_029930 (cnnm4b)


Basic Information

Item Value
gene id XLOC_029930
gene name cnnm4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13472234 ~ 13541052 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058628
ATGGCGACAGAATGGAGTGGGAAAGGGTGCACGCTAACTTTAATACTGTTCCTCTGGAGTAGAGTCTGCGGGAGTAAAGCGGAATCCTTGGGCAGCGACAGCCGGATCCTCGGCATGCGGCTGGAGAGGAGCGACAAGCCGGCCATGACCACCGAGGACGGGATCATACAGGTAACCGAGGAGAGCGACATCCAGCTCAGGTTCTATGGGCTGCAGATCAGCAATGACACCTGGGCGCAGATTAAGTTCATGGAGCAGGGCGAGGACAGCAGCTCTGACTCCAACAGGACTTGTGCAGACTTCACCAAAGACATCTCTGTGAGGACTAGTATGAGTGTGAACAGCCTGGGAACGTCTGGTGTGCTGGGAGTCAAAATCAAACCACTTAGGAAAAGTGAGTCCCAGAGGGATTATGGGCTGTGCATCAGGCAGAACGGGAGGTGGTTTTCACTGGGAGAACATGATGGAAGGTTGCGTGTGGTGGAGGAGAAGAAGTCCATGCTGCCCATATGGTTCCAGGTGATCCTGATCTGCTGCCTCCTGGTGCTCTCAGGTATGTTCAGTGGGTTAAACTTGGGGCTGATGGCTTTGGATCCCATGGAACTGAGAATCGTCCAAAGCTGTGGGACGGATAAGGAGAAGAAGTATGCGAGGAAGATTGAACCCATTCGTAGGAAAGGAAACTATCTGTTGTGTTCGCTTCTTCTGGGAAATGTGTTGGTGAACACCACGTTAACCATCCTACTGGATGATCTCATTGGTTCAGGTTTGGGCGCTGTGGTGGCATCAACCATTGGCATTGTTATCTTTGGAGAGATTGTTCCTCAAGCGCTCTGCTCTCGCCATGGTTTGGCAGTAGGTGCCAACACCATCCACGTCACTAAGTTCTTCATGTTTCTGACTTTTCCGTTGTCTTATCCCATTAGCAAGCTTTTGGACTGCGTGTTGGGGCAGGAGATTGGCACGGTGTACAATCGGGAGAAGCTGGTGGGGATGCTGAAGGTGACCGAGCCATACAATGACCTGGTGAAGGAGGAGATGAACATGATTCAGGGCGCGCTGGAGCTGAGGACTAAAACTGTGGAGGACGTCATGACTCCGCTTAATAACTGCTTCATGATCAATAGTGATGCAGTTTTGGACTTCAACACCATGTCGGAGATCATGGAGAGCGGATACACGCGCATTCCTGTTTATGAGGATGAGAGGACCAACATTGTGGACATCCTGTTTGTGAAGGACCTGGCCTTTGTGGATCCTGATGACTGCACCACTTTGAAGACCATCACTAAGTTCTACAACCATCCGGTTCACTTTGTGTTTCACGACACCAAGTTGGATTCAATGCTGGAGGAGTTTAAGAAAGGTAAATCCCATTTGGCGATTGTTCAGAAAGTCAATAATGAGGGCGAAGGAGATCCGTTTTATGAGGTGCTGGGATTGGTCACTCTGGAGGACGTCATCGAGGAGATCATCAAATGCGAAATCCTGGACGAGTCTGACCTCTACACTGATAACCGAAATAGAAAGAAAGTTGCACACAATAAGAACAAGCGAGACTTTTCTGCCTTCAAACATGAGAGTGAGTCTAAAGTGAAGATCTCCCCTCAGCTGCTGCTGGCTGCTCACCGCTTCCTCGCTACAGAGGTCAGTTTGTTCAGTCCGTCTCAGATCTCTGAGAAAATCCTGCTGCGTATCCTCAAACACCCTGACGTGATCCAGGAGATCAAATTCAACGAGAATGACAAGAAATCTTCACACCACTACCTGTACCTGCGTGGCAAACCCGTGGACTACTTCATCCTCATCCTGCAGGGCCGTGTGGAAGTGGAGGCTGGCAATGAAAATATGAAGTTCGAGACGGGACCTTTCTCTTTCTATGGTGTCATGGCTCTcagtgctccaacattagaaTTCCGCTCTCCTTCTCACATCAGCGGACTGAACAGATCTGCATCTCTGAGCTACACGGACCGTCCTGAATCGCAATCCGTCAGCGGCAGCAACACACAGCTCAGCAGCTCAGCTTTACCGCAGTACACACCAGACTTTAACGTGCGAGCCCTGGCAGATCTACAGTTTGTGAAGATCACGCGCTCTCAGTACCAAAACGGCCTGATGGCGTCTCGTCTGGACAGCTCTCCTCAGTCTCCAGACAGCGGACACGGCCGACAAGTGGACATGGACAACAGCACGTCGTCAGCTCCCCATCGCACTTCCGAAAACATGCTGACGCTCGCAGACGCCTCCGACGAGACCACCTCGCTCCTCAACGAACAGAACAGCCAACCTGCCCGCCAGGCCAACCACAACACACACAACGAGAGTGCCATATGA
>TCONS_00058629
ATGGAGTGGGAAAGGGTGCACGCTAACTTTAATACTGTTCCTCTGGAGTAGAGTCTGCGGGAGTAAAGCGGAATCCTTGGGCAGCGACAGCCGGATCCTCGGCATGCGGCTGGAGAGGAGCGACAAGCCGGCCATGACCACCGAGGACGGGATCATACAGGTAACCGAGGAGAGCGACATCCAGCTCAGGTTCTATGGGCTGCAGATCAGCAATGACACCTGGGCGCAGATTAAGTTCATGGAGCAGGGCGAGGACAGCAGCTCTGACTCCAACAGGACTTGTGCAGACTTCACCAAAGACATCTCTGTGAGGACTAGTATGAGTGTGAACAGCCTGGGAACGTCTGGTGTGCTGGGAGTCAAAATCAAACCACTTAGGAAAAGTGAGTCCCAGAGGGATTATGGGCTGTGCATCAGGCAGAACGGGAGGTGGTTTTCACTGGGAGAACATGATGGAAGGTTGCGTGTGGTGGAGGAGAAGAAGTCCATGCTGCCCATATGGTTCCAGGTGATCCTGATCTGCTGCCTCCTGGTGCTCTCAGGTATGTTCAGTGGGTTAAACTTGGGGCTGATGGCTTTGGATCCCATGGAACTGAGAATCGTCCAAAGCTGTGGGACGGATAAGGAGAAGAAGTATGCGAGGAAGATTGAACCCATTCGTAGGAAAGGAAACTATCTGTTGTGTTCGCTTCTTCTGGGAAATGTGTTGGTGAACACCACGTTAACCATCCTACTGGATGATCTCATTGGTTCAGGTTTGGGCGCTGTGGTGGCATCAACCATTGGCATTGTTATCTTTGGAGAGATTGTTCCTCAAGCGCTCTGCTCTCGCCATGGTTTGGCAGTAGGTGCCAACACCATCCACGTCACTAAGTTCTTCATGTTTCTGACTTTTCCGTTGTCTTATCCCATTAGCAAGCTTTTGGACTGCGTGTTGGGGCAGGAGATTGGCACGGTGTACAATCGGGAGAAGCTGGTGGGGATGCTGAAGGTGACCGAGCCATACAATGACCTGGTGAAGGAGGAGATGAACATGATTCAGGGCGCGCTGGAGCTGAGGACTAAAACTGTGGAGGACGTCATGACTCCGCTTAATAACTGCTTCATGATCAATAGTGATGCAGTTTTGGACTTCAACACCATGTCGGAGATCATGGAGAGCGGATACACGCGCATTCCTGTTTATGAGGATGAGAGGACCAACATTGTGGACATCCTGTTTGTGAAGGACCTGGCCTTTGTGGATCCTGATGACTGCACCACTTTGAAGACCATCACTAAGTTCTACAACCATCCGGTTCACTTTGTGTTTCACGACACCAAGTTGGATTCAATGCTGGAGGAGTTTAAGAAAGGTAAATCCCATTTGGCGATTGTTCAGAAAGTCAATAATGAGGGCGAAGGAGATCCGTTTTATGAGGTGCTGGGATTGGTCACTCTGGAGGACGTCATCGAGGAGATCATCAAATGCGAAATCCTGGACGAGTCTGACCTCTACACTGATAACCGAAATAGAAAGAAAGTTGCACACAATAAGAACAAGCGAGACTTTTCTGCCTTCAAACATGAGAGTGAGTCTAAAGTGAAGATCTCCCCTCAGCTGCTGCTGGCTGCTCACCGCTTCCTCGCTACAGAGGTCAGTTTGTTCAGTCCGTCTCAGATCTCTGAGAAAATCCTGCTGCGTATCCTCAAACACCCTGACGTGATCCAGGAGATCAAATTCAACGAGAATGACAAGAAATCTTCACACCACTACCTGTACCTGCGTGGCAAACCCGTGGACTACTTCATCCTCATCCTGCAG
>TCONS_00058630
CTTTCTCTTTCTATGGTGTCATGGCTCTcagtgctccaacattagaaTTCCGCTCTCCTTCTCACATCAGCGGACTGAACAGATCTGCATCTCTGAGCTACACGGACCGTCCTGAATCGCAATCCGTCAGCGGCAGCAACACACAGCTCAGCAGCTCAGCTTTACCGCAGTACACACCAGACTTTAACGTGCGAGCCCTGGCAGATCTACAGTTTGTGAAGATCACGCGCTCTCAGTACCAAAACGGCCTGATGGCGTCTCGTCTGGACAGCTCTCCTCAGTCTCCAGACAGCGGACACGGCCGACAAGTGGACATGGACAACAGCACGTCGTCAGCTCCCCATCGCACTTCCGAAAACATGCTGACGCTCGCAGACGCCTCCGACGAGACCACCTCGCTCCTCAACGAACAGAACAGCCAACCTGCCCGCCAGGCCAACCACAACACACACAACGAGAGTGCCATATGAcacgctctcacacacacacacgtcccaCACAACCACAGCACTTTTCCAGAACTTGTGTTCATCGAAAGCCCGTTTAGCTCTAGCCATCATAGCTCCCGGTGTAAACAGTGCGAGTCTATGAGGTGCAAACAAAAGATTTAACCTGCGAGACGAAGGCACAGAGAAGCCAAAGACTGAGAAAAAGACCCCCGTTTCGGACGGACTCTTTTATAGACTGCGCGGATAGAGacgtttctatatatatatatacatatatgaagATGTTTATTTTGTCAGCTCATTTCGTTGCTCACGGAAGCTGAACGAGGGAACTGTGGATGC

Function

symbol description
cnnm4b Predicted to enable magnesium ion transmembrane transporter activity and sodium ion transmembrane transporter activity. Acts upstream of or within retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle and plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000074309 ENSDARG00000103737

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058628 False 2337 mRNA 0.51 7 13472234 13540731
TCONS_00058629 False 1804 mRNA 0.50 4 13472245 13504156
TCONS_00058630 True 791 mRNA 0.52 3 13521081 13541052

Neighbor

gene id symbol gene type direction distance location
XLOC_029929 sec14l8 coding upstream 2927 13427826 ~ 13469307 (+)
XLOC_029928 tctn2 coding upstream 44885 13394543 ~ 13427349 (+)
XLOC_029926 ccl19a.1 coding upstream 79272 13353866 ~ 13392962 (+)
XLOC_029927 ccl19a.2 coding upstream 95810 13373593 ~ 13376424 (+)
XLOC_029925 ydjc coding upstream 136610 13308139 ~ 13335624 (+)
XLOC_029931 ckap2l coding downstream 8551 13549603 ~ 13561074 (+)
XLOC_029932 NA coding downstream 62177 13603229 ~ 13616296 (+)
XLOC_029933 h2az2a coding downstream 106236 13647288 ~ 13652687 (+)
XLOC_029934 NA coding downstream 124766 13665818 ~ 13676027 (+)
XLOC_029935 hk2 coding downstream 329288 13870340 ~ 14004206 (+)
XLOC_029924 dre-mir-130b non-coding upstream 172820 13299331 ~ 13299414 (+)
XLOC_029923 dre-mir-454b non-coding upstream 175812 13296307 ~ 13296422 (+)
XLOC_029922 NA non-coding upstream 179760 13291009 ~ 13292474 (+)
XLOC_029921 dre-mir-301b non-coding upstream 182801 13289353 ~ 13289433 (+)
XLOC_029920 dre-mir-130c-2 non-coding upstream 183328 13288828 ~ 13288906 (+)
XLOC_029936 NA non-coding downstream 557290 14098342 ~ 14121733 (+)
XLOC_029937 NA non-coding downstream 786280 14327332 ~ 14330018 (+)
XLOC_029938 BX927201.1 non-coding downstream 1101100 14642152 ~ 14642269 (+)

Expression


Co-expression Network