Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058633 |
| length | 831 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 5 |
| gene id | XLOC_029933 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 13647288 ~ 13652687 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006325 | chromatin organization | biological_process |
| GO:0006342 | chromatin silencing | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005694 | chromosome | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020717-1 | Predicted to enable DNA binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Is expressed in ovarian follicle. Orthologous to human H2AZ2 (H2A.Z variant histone 2). |
| ensembl_id | ENSDART00000099660 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00058632 | lncRNA | upstream | 30992 | 13603536 ~ 13616296 (+) | False | XLOC_029932 |
| TCONS_00061411 | lncRNA | upstream | 36987 | 13609396 ~ 13610301 (+) | True | XLOC_029932 |
| TCONS_00061410 | lncRNA | upstream | 43626 | 13603229 ~ 13603662 (+) | False | XLOC_029932 |
| TCONS_00058627 | lncRNA | upstream | 179020 | 13461112 ~ 13468268 (+) | True | XLOC_029929 |
| TCONS_00061666 | lncRNA | upstream | 354814 | 13291009 ~ 13292474 (+) | True | XLOC_029922 |
| TCONS_00061667 | lncRNA | downstream | 13131 | 13665818 ~ 13671755 (+) | False | XLOC_029934 |
| TCONS_00061668 | lncRNA | downstream | 13131 | 13665818 ~ 13672031 (+) | False | XLOC_029934 |
| TCONS_00061669 | lncRNA | downstream | 13236 | 13665923 ~ 13672031 (+) | False | XLOC_029934 |
| TCONS_00061670 | lncRNA | downstream | 13236 | 13665923 ~ 13676027 (+) | True | XLOC_029934 |
| TCONS_00061412 | lncRNA | downstream | 445655 | 14098342 ~ 14121733 (+) | True | XLOC_029936 |
| TCONS_00058631 | mRNA | upstream | 86214 | 13549603 ~ 13561074 (+) | True | XLOC_029931 |
| TCONS_00058630 | mRNA | upstream | 106236 | 13521081 ~ 13541052 (+) | True | XLOC_029930 |
| TCONS_00058628 | mRNA | upstream | 106557 | 13472234 ~ 13540731 (+) | False | XLOC_029930 |
| TCONS_00058629 | mRNA | upstream | 143132 | 13472245 ~ 13504156 (+) | False | XLOC_029930 |
| TCONS_00058626 | mRNA | upstream | 177981 | 13427826 ~ 13469307 (+) | False | XLOC_029929 |
| TCONS_00058635 | mRNA | downstream | 217653 | 13870340 ~ 14004206 (+) | False | XLOC_029935 |
| TCONS_00058636 | mRNA | downstream | 238515 | 13891202 ~ 14003866 (+) | True | XLOC_029935 |
| TCONS_00058638 | mRNA | downstream | 1549808 | 15202495 ~ 15214876 (+) | False | XLOC_029940 |
| TCONS_00058639 | mRNA | downstream | 1550734 | 15203421 ~ 15215483 (+) | True | XLOC_029940 |
| TCONS_00058640 | mRNA | downstream | 1698267 | 15350954 ~ 15353787 (+) | False | XLOC_029942 |
| TCONS_00058617 | other | upstream | 347874 | 13299331 ~ 13299414 (+) | True | XLOC_029924 |
| TCONS_00058616 | other | upstream | 350866 | 13296307 ~ 13296422 (+) | True | XLOC_029923 |
| TCONS_00058615 | other | upstream | 357855 | 13289353 ~ 13289433 (+) | True | XLOC_029921 |
| TCONS_00058614 | other | upstream | 358382 | 13288828 ~ 13288906 (+) | True | XLOC_029920 |
| TCONS_00058611 | other | upstream | 719734 | 12927438 ~ 12927554 (+) | True | XLOC_029916 |
| TCONS_00058637 | other | downstream | 989465 | 14642152 ~ 14642269 (+) | True | XLOC_029938 |
| TCONS_00058647 | other | downstream | 2090450 | 15743137 ~ 15743253 (+) | True | XLOC_029945 |
| TCONS_00058656 | other | downstream | 3376611 | 17029298 ~ 17029414 (+) | True | XLOC_029952 |
| TCONS_00058672 | other | downstream | 5480749 | 19133436 ~ 19134910 (+) | False | XLOC_029967 |
| TCONS_00058694 | other | downstream | 6425007 | 20077694 ~ 20077810 (+) | True | XLOC_029982 |
