RNA id: TCONS_00061410


Basic Information

Item Value
RNA id TCONS_00061410
length 359
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_029932
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13603229 ~ 13616296 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtatgtttgttattgaagtcaataaaaaaaaaaataataaactaataaagtggccggtgagtgtatagcaAATCAACAAAGCCACAGACCGCCGGCCAGTGGAAAACGTCAGAGTAACTTTTGGACCTTCCGGCCCGCTATACCACTGTCGTATTCCAGGTGGTGTATTTAACTTTTTCCCACAAAGCGAGAAAGCTCTCATCACGGGTCAGATCACAGCAGCTTTATTTCGACATTCAGTCGGTGCAGGCTAGAGAAAGTGGAAGATTAAGTTCCGAAGACCGTCAAAGGTAAGATATGCGTGCATTTATATTACACCTTGCAATTCAATATGAAGGTGTGCTGCAGAATTGACATTG

Function

GO:

id name namespace
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0042133 neurotransmitter metabolic process biological_process
GO:0009583 detection of light stimulus biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0005882 intermediate filament cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0015204 urea transmembrane transporter activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058627 lncRNA upstream 134961 13461112 ~ 13468268 (+) True XLOC_029929
TCONS_00061666 lncRNA upstream 310755 13291009 ~ 13292474 (+) True XLOC_029922
TCONS_00061409 lncRNA upstream 504773 13096467 ~ 13098456 (+) True XLOC_029918
TCONS_00061663 lncRNA upstream 604188 12992736 ~ 12999041 (+) False XLOC_029917
TCONS_00061411 lncRNA downstream 5734 13609396 ~ 13610301 (+) True XLOC_029932
TCONS_00061667 lncRNA downstream 62156 13665818 ~ 13671755 (+) False XLOC_029934
TCONS_00061668 lncRNA downstream 62156 13665818 ~ 13672031 (+) False XLOC_029934
TCONS_00061669 lncRNA downstream 62261 13665923 ~ 13672031 (+) False XLOC_029934
TCONS_00061670 lncRNA downstream 62261 13665923 ~ 13676027 (+) True XLOC_029934
TCONS_00058631 mRNA upstream 42155 13549603 ~ 13561074 (+) True XLOC_029931
TCONS_00058630 mRNA upstream 62177 13521081 ~ 13541052 (+) True XLOC_029930
TCONS_00058628 mRNA upstream 62498 13472234 ~ 13540731 (+) False XLOC_029930
TCONS_00058629 mRNA upstream 99073 13472245 ~ 13504156 (+) False XLOC_029930
TCONS_00058626 mRNA upstream 133922 13427826 ~ 13469307 (+) False XLOC_029929
TCONS_00058633 mRNA downstream 43626 13647288 ~ 13652687 (+) False XLOC_029933
TCONS_00058634 mRNA downstream 43661 13647323 ~ 13650076 (+) True XLOC_029933
TCONS_00058635 mRNA downstream 266678 13870340 ~ 14004206 (+) False XLOC_029935
TCONS_00058636 mRNA downstream 287540 13891202 ~ 14003866 (+) True XLOC_029935
TCONS_00058638 mRNA downstream 1598833 15202495 ~ 15214876 (+) False XLOC_029940
TCONS_00058617 other upstream 303815 13299331 ~ 13299414 (+) True XLOC_029924
TCONS_00058616 other upstream 306807 13296307 ~ 13296422 (+) True XLOC_029923
TCONS_00058615 other upstream 313796 13289353 ~ 13289433 (+) True XLOC_029921
TCONS_00058614 other upstream 314323 13288828 ~ 13288906 (+) True XLOC_029920
TCONS_00058611 other upstream 675675 12927438 ~ 12927554 (+) True XLOC_029916
TCONS_00058637 other downstream 1038490 14642152 ~ 14642269 (+) True XLOC_029938
TCONS_00058647 other downstream 2139475 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058656 other downstream 3425636 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058672 other downstream 5529774 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058694 other downstream 6474032 20077694 ~ 20077810 (+) True XLOC_029982

Expression Profile

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