XLOC_029908 (zgc:171242)


Basic Information

Item Value
gene id XLOC_029908
gene name zgc:171242
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 12515402 ~ 12517368 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058598
CTGCATTGCGTTTCTCCGTCCACCATTTTCCACCTGTGGCTGCAGACGAGTTGATGAGACGCTCCCGATTACAAGAAGTAATTTCTTTGGCCTCTGGCACTGATGATGTGGAGAGGGGCATCTCAACCACAGTCATGGGGATTTACATAAACCGAAGTTATGACAACGGGGAGCCACAGGATGTGGGAATTGTGATCGAAGGCATTAAAGTTCTGACCAACGTTGGCAGTGTCATCATGGGTTTTGTTGTGCTGTTTGGGCTCATTTATGCCCTTGATCTGAGATTTCCAGAAAACCTCAAGTACACCTTTGAGTTCATCCAGAAAATCACAATGAATCTGGATGGACACAAGCTCAATCCAAAGATACAGCAGCTGAAAATTGTTTTCTTAAAGTGAACACCAGATGACAAATAAATGAAGTTTCTTACGCTTTTCGTATTTGGGATTCatttgtttcttcaatcttctgcCATCTTTCATCTACTAAACCAACAACACTGAACTCATGGATGTTTTTCATGTGACATTTTACATTGTGGCTAAGCTACAAAAAGGAAGCATGtggacaagtaaaaaaaaaaattgtacatacaaatgcaaaataatgtttttatgatAAATGTTTTCTATGCAGCCAGGGTGATGGAGTGACTTGGTGTGATAATTGATACCCCTTACAAACTAATGGTTGATGAGGTTTTAAGTTTGGATTTCCCAatgcaaattttttatttatttatttatttattatttttgggaTGCCAACATCTGCACATCATAGCTCATTCATGTACAGTATAGTGTCAACAAGTGTCTCCATTACTCTCATACCTGTCAGGTAATTACTTGACGCAACACTTGTTAAAATGGACTTGACCTAATGCTTtggttttttttgctttgttttttctgaattttTGACGTTCAGATTATTGAATTATGACTGGCCAGAGCAAGTCACATGTTCAGAAATTGTTCTAGTTTTGGTGACAATGGGTCTCCTTGTTATAATCAAACTGTCTTGGTCTGTTTTCACCTTCCTATAGTCTAAATTTGGTCCCCACAGCCTTTTTTTTAactgtgtttttgtgtgaattGACCATTTGTACTACACAGATTAAAAATGCTGTACCTCTCGA

Function

symbol description
zgc:171242 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-79 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000078551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058598 True 1141 mRNA 0.38 2 12515402 12517368

Neighbor

gene id symbol gene type direction distance location
XLOC_029907 NA coding upstream 489448 12025519 ~ 12025954 (+)
XLOC_029906 NA coding upstream 530518 11982586 ~ 11984884 (+)
XLOC_029905 SPRING1 coding upstream 555184 11943792 ~ 11960218 (+)
XLOC_029904 NA coding upstream 600112 11909715 ~ 11915290 (+)
XLOC_029903 CU571331.1 coding upstream 614728 11900557 ~ 11900674 (+)
XLOC_029909 rfc5 coding downstream 11325 12528693 ~ 12549732 (+)
XLOC_029910 si:dkey-98f17.5 coding downstream 73035 12590403 ~ 12625837 (+)
XLOC_029911 dre-mir-22b coding downstream 93434 12610802 ~ 12610883 (+)
XLOC_029912 pole coding downstream 226272 12743640 ~ 12804906 (+)
XLOC_029913 pes coding downstream 319545 12836913 ~ 12865386 (+)
XLOC_029902 CT583689.1 non-coding upstream 665911 11849377 ~ 11849491 (+)
XLOC_029916 BX470167.1 non-coding downstream 410070 12927438 ~ 12927554 (+)
XLOC_029917 NA non-coding downstream 475368 12992736 ~ 12999041 (+)
XLOC_029918 NA non-coding downstream 579099 13096467 ~ 13098456 (+)
XLOC_029920 dre-mir-130c-2 non-coding downstream 771460 13288828 ~ 13288906 (+)

Expression


Co-expression Network