XLOC_029965 (pgam5)


Basic Information

Item Value
gene id XLOC_029965
gene name pgam5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18925367 ~ 18936235 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058667
ACAAATGAAGTCGTGACTCTGCTTAAGGAAGTTAATTTTGTGTTAAAACCAACTATATTCTACTGGATTAAACTCTCATACAGGTTTGGGGAAAATAAAGCACATGTTAGAAACAGCAGGACTTCTACGTCCTCTTTGTTCGACGCTGTGAGATAGAAGCAAACAGCGGCACTTCCTAAGCAGTCCGACTCTCTCATTGTGCGTCACGGCGCTGAAAAGCAGCTCCGCGGTGACTCCGGTGTTTTGTGCGGGTTTGAAGCATGTCTTTTCGGAGGGCGCTAAGTCTCGCATGCGGGTTCGCTGGCGGATCCGCGGTACTCGTGTGTGCGGCGGTGGTGGCTGATAAAAATGGGTATTTTGGAGAGGGACGCCGAGTCACAGAAACTCTGGCAGCCGTAAACGCAGCGCATCCTCCGGCATGGCCCACTGCGAACGGGTGGGATTATAACTGGGACAAACGTGAACCTTCTTCTATGGTGAATGGAAAGAGAAAGGAAAGCACTGGCGAAAATGGAAGTCAAGACGCAGAGAACAACAAACCCAGAGCTACACGCCACATCTTTCTCATTCGACACTCTCAGTACAACCTCAAGGGTGATGGAGATAAAGAGAGATTCCTGACGCCTTTAGGTCGTGAACAGGCTGAATTTACAGGACAGAGATTAGCATCATTTGGACTGAAGTACGACACGCtcattcactcctccatgaccagaGCGACAGAGACGGCCAACATCATCAGCAAATACCTGCCAGgtgtggaGCTTGTGAGCTGTGATTTACTTCGAGAGGGGGCACCGATAGAGCCTGTCCCACCAGTCACTCACTGGAAACCTGAGGCAGTGCAGTACCATGAGGACGGCGCTCGGATCGAGGCTGCGTTTCGCCGCTACATCCACCGAGCTGACGCCAAGCAGAAGGAGGACAGCTACGAGATTATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGGCTCTGCAGTTTCCTCCAGAAGGCTGGCTGAGGTTGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTCCGTCCCAGCGGTCGAGTGTCTCTGAGAGCACTGGGAGACTCCGGCTTCATGCCTCCAGATAAACTCACCAGAACCTGACCTTCTCCAGCAGGACCAGCACAGCCTCTTCACAACTAAACGATCACAGATATGTTGAGTGGATGATAGAGTTGCAAAGTGTCAAAACATCTCCATAAATGCTCAGCTAATAATTTACTGAAATACAAACATGCCATTTAAATTCACCAAATAGTTTTTCTAAACCACGTTCCTGGAAAagcaccaacactgcatgttttagatgtctcctttgtctgtcacacctattacaggtctttcagtctctgctaatgagctgatgatctgaatcaggtgtgtttggttaaggagacatgaaaaatgtgcaaTGCTTGTGaccctccaggaatgtggttgagaaacactgaactaGTTGGTTAAAGAAATTCCTTGCCCAAAGATTAGAACATACTTGCCTTCAGATGGATGCTTGTTTAAAGAAGTTGctaaccagtagccattgacatccacgGAAAgaaaaatatgttgtgttcaggctaaagaaactcaaaccggtTGGGAACAACTGAATAAATCATAACAGAACCATTCTTAATCATACAAAGCTGcaattaaagggagagttcaccccaaaatgtcatcatttattcagttgtttaaacttttattttctttcttctgtagaaaatatactgaaaaatgtggggaaaaacagccattaacttctttttttgtttctacTTTGGcagttttttccaacatttttcaaattatcttgttttgtgctcaacagaagcaAGGAAATAAAGGTTTATAATCACTTTTGAGTGCGAGGAAAGTTTTATTCTTACGTGAATTATCACTTTAAGGACTTTCTTTGCAACTATATCATCTGTTAAGAGTGGTGATCGGTTCTCCATAAGTGTCTTGAGtgaaatttgtacttttttaaggattattattatttgttgttgttgaattagACACTTCTGTGCCATGCTTTGATCTATAACCATAACTGAACGGTGGAAACAACCAGCAAGTGTACTTTTTATTCTGTTTAGAAGATGTCTTTTTTTCAGGACGCAATCTCTGGAGGCCTTGTCGAGATGTTTGGCGTGTGTGTTTGCACTGTTTACAGGGAGTTGTGTGTTTATGATTGTTTTTAGAGGCAAgatgtgtgtttgattaaaaaataagaataaatgtgAGATTCTTGCCATATGGAGGTTGAGAAAGATAGTATTaatatttgtatgttgttttttgtgCACAAGAAAACTGGCAGTAAAACGTTTTCATTTGAGATGTTCA

Function

symbol description
pgam5 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

GO:

id name namespace
GO:0012501 programmed cell death biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko04668 TNF signaling pathway
ko04137 Mitophagy - animal
ko04217 Necroptosis

ZFIN:

id description
ZDB-GENE-030131-683 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

Ensembl:

ensembl_id ENSDARG00000035608

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058667 True 2384 mRNA 0.43 6 18925367 18936235

Neighbor

gene id symbol gene type direction distance location
XLOC_029964 NA coding upstream 98602 18824394 ~ 18826765 (+)
XLOC_029962 NA coding upstream 115154 18808714 ~ 18810213 (+)
XLOC_029961 NA coding upstream 122033 18802187 ~ 18803334 (+)
XLOC_029960 NA coding upstream 590981 18334028 ~ 18334386 (+)
XLOC_029959 hira coding upstream 852523 18047111 ~ 18072844 (+)
XLOC_029966 NA coding downstream 131949 19068184 ~ 19079916 (+)
XLOC_029967 unc13ba coding downstream 157918 19094153 ~ 19237700 (+)
XLOC_029968 atp8b5a coding downstream 325156 19261391 ~ 19296249 (+)
XLOC_029969 rusc2 coding downstream 373642 19309877 ~ 19331482 (+)
XLOC_029970 acacb coding downstream 400873 19337108 ~ 19383694 (+)
XLOC_029955 NA non-coding upstream 1382751 17309732 ~ 17542616 (+)
XLOC_029971 NA non-coding downstream 464164 19400399 ~ 19403378 (+)
XLOC_029972 NA non-coding downstream 468297 19404532 ~ 19405938 (+)
XLOC_029980 NA non-coding downstream 1025560 19961795 ~ 19965283 (+)
XLOC_029982 BX547941.1 non-coding downstream 1141459 20077694 ~ 20077810 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01431506_01435873 PGAM5 coding CI01000071 null 1430577 ~ 1435873 (-)