RNA id: TCONS_00058667


Basic Information

Item Value
RNA id TCONS_00058667
length 2384
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_029965
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18925367 ~ 18936235 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAATGAAGTCGTGACTCTGCTTAAGGAAGTTAATTTTGTGTTAAAACCAACTATATTCTACTGGATTAAACTCTCATACAGGTTTGGGGAAAATAAAGCACATGTTAGAAACAGCAGGACTTCTACGTCCTCTTTGTTCGACGCTGTGAGATAGAAGCAAACAGCGGCACTTCCTAAGCAGTCCGACTCTCTCATTGTGCGTCACGGCGCTGAAAAGCAGCTCCGCGGTGACTCCGGTGTTTTGTGCGGGTTTGAAGCATGTCTTTTCGGAGGGCGCTAAGTCTCGCATGCGGGTTCGCTGGCGGATCCGCGGTACTCGTGTGTGCGGCGGTGGTGGCTGATAAAAATGGGTATTTTGGAGAGGGACGCCGAGTCACAGAAACTCTGGCAGCCGTAAACGCAGCGCATCCTCCGGCATGGCCCACTGCGAACGGGTGGGATTATAACTGGGACAAACGTGAACCTTCTTCTATGGTGAATGGAAAGAGAAAGGAAAGCACTGGCGAAAATGGAAGTCAAGACGCAGAGAACAACAAACCCAGAGCTACACGCCACATCTTTCTCATTCGACACTCTCAGTACAACCTCAAGGGTGATGGAGATAAAGAGAGATTCCTGACGCCTTTAGGTCGTGAACAGGCTGAATTTACAGGACAGAGATTAGCATCATTTGGACTGAAGTACGACACGCtcattcactcctccatgaccagaGCGACAGAGACGGCCAACATCATCAGCAAATACCTGCCAGgtgtggaGCTTGTGAGCTGTGATTTACTTCGAGAGGGGGCACCGATAGAGCCTGTCCCACCAGTCACTCACTGGAAACCTGAGGCAGTGCAGTACCATGAGGACGGCGCTCGGATCGAGGCTGCGTTTCGCCGCTACATCCACCGAGCTGACGCCAAGCAGAAGGAGGACAGCTACGAGATTATCGTCTGTCATGCTAATGTCATCCGCTATTTTGTGTGCAGGGCTCTGCAGTTTCCTCCAGAAGGCTGGCTGAGGTTGGGCCTGAACAACGGCAGCATCACCTGGCTGACGGTCCGTCCCAGCGGTCGAGTGTCTCTGAGAGCACTGGGAGACTCCGGCTTCATGCCTCCAGATAAACTCACCAGAACCTGACCTTCTCCAGCAGGACCAGCACAGCCTCTTCACAACTAAACGATCACAGATATGTTGAGTGGATGATAGAGTTGCAAAGTGTCAAAACATCTCCATAAATGCTCAGCTAATAATTTACTGAAATACAAACATGCCATTTAAATTCACCAAATAGTTTTTCTAAACCACGTTCCTGGAAAagcaccaacactgcatgttttagatgtctcctttgtctgtcacacctattacaggtctttcagtctctgctaatgagctgatgatctgaatcaggtgtgtttggttaaggagacatgaaaaatgtgcaaTGCTTGTGaccctccaggaatgtggttgagaaacactgaactaGTTGGTTAAAGAAATTCCTTGCCCAAAGATTAGAACATACTTGCCTTCAGATGGATGCTTGTTTAAAGAAGTTGctaaccagtagccattgacatccacgGAAAgaaaaatatgttgtgttcaggctaaagaaactcaaaccggtTGGGAACAACTGAATAAATCATAACAGAACCATTCTTAATCATACAAAGCTGcaattaaagggagagttcaccccaaaatgtcatcatttattcagttgtttaaacttttattttctttcttctgtagaaaatatactgaaaaatgtggggaaaaacagccattaacttctttttttgtttctacTTTGGcagttttttccaacatttttcaaattatcttgttttgtgctcaacagaagcaAGGAAATAAAGGTTTATAATCACTTTTGAGTGCGAGGAAAGTTTTATTCTTACGTGAATTATCACTTTAAGGACTTTCTTTGCAACTATATCATCTGTTAAGAGTGGTGATCGGTTCTCCATAAGTGTCTTGAGtgaaatttgtacttttttaaggattattattatttgttgttgttgaattagACACTTCTGTGCCATGCTTTGATCTATAACCATAACTGAACGGTGGAAACAACCAGCAAGTGTACTTTTTATTCTGTTTAGAAGATGTCTTTTTTTCAGGACGCAATCTCTGGAGGCCTTGTCGAGATGTTTGGCGTGTGTGTTTGCACTGTTTACAGGGAGTTGTGTGTTTATGATTGTTTTTAGAGGCAAgatgtgtgtttgattaaaaaataagaataaatgtgAGATTCTTGCCATATGGAGGTTGAGAAAGATAGTATTaatatttgtatgttgttttttgtgCACAAGAAAACTGGCAGTAAAACGTTTTCATTTGAGATGTTCA

Function

GO:

id name namespace
GO:0012501 programmed cell death biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
ko04668 TNF signaling pathway
ko04137 Mitophagy - animal
ko04217 Necroptosis

ZFIN:

id description
ZDB-GENE-030131-683 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in peptidyl-threonine dephosphorylation and positive regulation of mitochondrial fission. Predicted to act upstream of or within programmed cell death. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human PGAM5 (PGAM family member 5, mitochondrial serine/threonine protein phosphatase).

Ensembl:

ensembl_id ENSDART00000051621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061679 lncRNA upstream 98602 18824394 ~ 18826765 (+) True XLOC_029964
TCONS_00061677 lncRNA upstream 115154 18808714 ~ 18810213 (+) True XLOC_029962
TCONS_00061676 lncRNA upstream 122033 18802187 ~ 18803334 (+) True XLOC_029961
TCONS_00061425 lncRNA upstream 590981 18334028 ~ 18334386 (+) True XLOC_029960
TCONS_00058666 lncRNA upstream 871639 18052843 ~ 18053728 (+) True XLOC_029959
TCONS_00061426 lncRNA downstream 131949 19068184 ~ 19079916 (+) True XLOC_029966
TCONS_00061680 lncRNA downstream 464164 19400399 ~ 19403378 (+) True XLOC_029971
TCONS_00061427 lncRNA downstream 468297 19404532 ~ 19405938 (+) True XLOC_029972
TCONS_00061681 lncRNA downstream 1025560 19961795 ~ 19965283 (+) True XLOC_029980
TCONS_00061682 lncRNA downstream 1606665 20542900 ~ 20546489 (+) False XLOC_029992
TCONS_00058665 mRNA upstream 852523 18047111 ~ 18072844 (+) False XLOC_029959
TCONS_00058663 mRNA upstream 890114 18012185 ~ 18035253 (+) False XLOC_029958
TCONS_00058662 mRNA upstream 904984 18012154 ~ 18020383 (+) False XLOC_029958
TCONS_00058664 mRNA upstream 905235 18014931 ~ 18020132 (+) True XLOC_029958
TCONS_00058660 mRNA upstream 1112068 17780475 ~ 17813299 (+) False XLOC_029957
TCONS_00058669 mRNA downstream 157918 19094153 ~ 19237700 (+) False XLOC_029967
TCONS_00058668 mRNA downstream 157918 19094153 ~ 19237700 (+) False XLOC_029967
TCONS_00058670 mRNA downstream 158227 19094462 ~ 19237700 (+) False XLOC_029967
TCONS_00058671 mRNA downstream 160959 19097194 ~ 19134788 (+) False XLOC_029967
TCONS_00058673 mRNA downstream 229714 19165949 ~ 19204316 (+) True XLOC_029967
TCONS_00058656 other upstream 1895953 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058647 other upstream 3182114 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058637 other upstream 4283098 14642152 ~ 14642269 (+) True XLOC_029938
TCONS_00058617 other upstream 5625953 13299331 ~ 13299414 (+) True XLOC_029924
TCONS_00058616 other upstream 5628945 13296307 ~ 13296422 (+) True XLOC_029923
TCONS_00058672 other downstream 197201 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058694 other downstream 1141459 20077694 ~ 20077810 (+) True XLOC_029982
TCONS_00058714 other downstream 1738698 20674933 ~ 20675050 (+) True XLOC_029996
TCONS_00058725 other downstream 2321983 21258218 ~ 21259238 (+) True XLOC_030005
TCONS_00058726 other downstream 2334215 21270450 ~ 21271359 (+) True XLOC_030006

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_01431506_01435873.mRNA True 1799 mRNA 0.44 6 CI01000071 1430577 ~ 1435873 (-)