XLOC_029975 (aldh3b2)


Basic Information

Item Value
gene id XLOC_029975
gene name aldh3b2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19477555 ~ 19488134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058684
ACCATGAGCTCCCCGCCAAGCCCTTCTCCAACCAGGTGGTTCAAAGCCCTGCGGAGGTCGAGGGTGGAGGATGTGTGTGTGAAGACTGGAGTATCTGTATGTTCAGAGGTCTTGAGGAGAGCCAGAGCAGCTTTCAGCGCGGGCCGAACAGCCCAGGATACTTTCAGACTGGCTCAGCTCGAGGCTTTGCTGCGCATGCTGATGGACCACGAGTGTGACTTTGTGGATGCTCTTGGAAGGGATGTGCACAAGCCTCGCTTTGAAACTGTGATGTCAGAGCTGCTGGTAGTCAAAAACGAGGCTCTGCATGCCATTAGCAACTTGAAGAAATGGATGGAGCCTCAACGCATTGAACGTGACTGGGCTACAGCATTTGATGAATGTGTCTTGGTAAATGAGCCCCTGGGTTTAGTATTGATCATTGGGAACTGGACCAGTCCTCTCCAGCTCTGTCTCGTGCCTTTAGTAGGTGCCATTGCAGCTGgtaactGTGCAATTATCAGCCCATCTGAAACCTGCACACATACAGCTGGGCTCCTGCACAGACTCATACCTGCGTATCTGGACAATGAGTGCTTCCACTCTGTTATAGCAGCAGCACATGAAATTCCAGAAATAGTGGATCTTACATTTGATTATGTGTTCTTCTCTGGCGATAAAGAGGACGGGATTAAAGTGGCTCAAGCTGCTGCTCGCACCCTGGCTCGGGTTACGTTGGTGCTGCGCGTTAAAAATCCTTGCTACGTTGACAGTCAGTGTGACATCAACACCACAGCTCGGCGCATTACCTGGGCGCGATTCCACAATGCTGGCCAAAGTGCTGTGGCTCCTGACTACATCCTGTGCCATGCAGAGGTCAAAGAAAACCTCCTGCAGGCTCTGCGCTGCTCACTCCAGCAGTTTTACGGCACTGATCCCCGGGAGTCCCGGAGCTTTGGCAGGATAGTGAATGAGGAGAACTTCAGCAAGGCCAAAGAGCAGCTCTGGGGATCTGGAAAGGTCATCATAGGGGGTCAGGTCAATGAGATAGAGAGATACATTGCACCAACTGTCCTGATGGATGTCATGGAGTCCGATCCGATCATGCACCAGGACGTTTTTGGTCCCATCCTTCCCATACTGACAGTCCAGGATGCAGACGAGGCTGTAGCTTTCATCAACTCCAGAGAGAAACCACTATGTGTTTATGCTTACTCTAGCAACAACAAGGTGATCTCCAAGATAATGAATGAGACATCCAGCGgaagtttttgttcaaatgacAGCGTCTTACAGAGTGTGATGGTGGGTCTGCCATTCGGAGGAGTTGgtgccagtGGGATGGGCTCATATCATGGTCGCTACAGTTTTGATGCATTCTCCCATAAGAAGTCGTGTCTTCTGCGCAGCACTCGGATTGAGTGCATGACAGTCTTGCGTTATCCACCTTATGAGGACCGTAACCTGTCTCTGGTCAGTCTGGCCAGCTTTCTAAATCTGAAGGGTCAAGGTTGGTGCACTATCTTGTAA
>TCONS_00058685
ATGTTCAGAGGTCTTGAGGAGAGCCAGAGCAGCTTTCAGCGCGGGCCGAACAGCCCAGGATACTTTCAGACTGGCTCAGCTCGAGGCTTTGCTGCGCATGCTGATGGACCACGAGTGTGACTTTGTGGATGCTCTTGGAAGGGATGTGCACAAGCCTCGCTTTGAAACTGTGATGTCAGAGCTGCTGGTAGTCAAAAACGAGGCTCTGCATGCCATTAGCAACTTGAAGAAATGGATGGAGCCTCAACGCATTGAACGTGACTGGGCTACAGCATTTGATGAATGTGTCTTGGTAAATGAGCCCCTGGGTTTAGTATTGATCATTGGGAACTGGACCAGTCCTCTCCAGCTCTGTCTCGTGCCTTTAGTAGGTGCCATTGCAGCTGgtaactGTGCAATTATCAGCCCATCTGAAACCTGCACACATACAGCTGGGCTCCTGCACAGACTCATACCTGCGTATCTGGACAATGAGTGCTTCCACTCTGTTATAGCAGCAGCACATGAAATTCCAGAAATAGTGGATCTTACATTTGATTATGTGTTCTTCTCTGGCGATAAAGAGGACGGGATTAAAGTGGCTCAAGCTGCTGCTCGCACCCTGGCTCGGGTTACGTTGGTGCTGCGCGTTAAAAATCCTTGCTACGTTGACAGTCAGTGTGACATCAACACCACAGCTCGGCGCATTACCTGGGCGCGATTCCACAATGCTGGCCAAAGTGCTGTGGCTCCTGACTACATCCTGTGCCATGCAGAGGTCAAAGAAAACCTCCTGCAGGCTCTGCGCTGCTCACTCCAGCAGTTTTACGGCACTGATCCCCGGGAGTCCCGGAGCTTTGGCAGGATAGTGAATGAGGAGAACTTCAGCAAGGCCAAAGAGCAGCTCTGGGGATCTGGAAAGGTCATCATAGGGGGTCAGGTCAATGAGATAGAGAGATACATTGCACCAACTGTCCTGATGGATGTCATGGAGTCCGATCCGATCATGCACCAGGACGTTTTTGGTCCCATCCTTCCCATACTGACAGTCCAGGATGCAGACGAGGCTGTAGCTTTCATCAACTCCAGAGAGAAACCACTATGTGTTTATGCTTACTCTAGCAACAACAAGGTGATCTCCAAGATAATGAATGAGACATCCAGCGgaagtttttgttcaaatgacAGCGTCTTACAGAGTGTGATGGTGGGTCTGCCATTCGGAGGAGTTGgtgccagtGGGATGGGCTCATATCATGGTCGCTACAGTTTTGATGCATTCTCCCATAAGAAGTCGTGTCTTCTGCGCAGCACTCGGATTGAGTGCATGACAGTCTTGCGTTATCCACCTTATGAGGACCGTAACCTGTCTCTGGTCAGTCTGGCCAGCTTTCTAAATCTGAAGGGTCAAGGTTGGTGCACTATCTTGTAA

Function

symbol description
aldh3b2 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Is expressed in retina. Orthologous to human ALDH3B2 (aldehyde dehydrogenase 3 family member B2).

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-79 Predicted to enable 3-chloroallyl aldehyde dehydrogenase activity. Predicted to act upstream of or within cellular aldehyde metabolic process. Is expressed in retina. Orthologous to human ALDH3B2 (aldehyde dehydrogenase 3 family member B2).

Ensembl:

ensembl_id ENSDARG00000035606

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058684 False 1509 mRNA 0.51 10 19477555 19488134
TCONS_00058685 True 1411 mRNA 0.50 9 19479200 19488134

Neighbor

gene id symbol gene type direction distance location
XLOC_029974 ube3b coding upstream 5434 19448078 ~ 19472121 (+)
XLOC_029973 myo1ha coding upstream 41572 19413838 ~ 19435983 (+)
XLOC_029972 NA coding upstream 71617 19404532 ~ 19405938 (+)
XLOC_029971 NA coding upstream 74177 19400399 ~ 19403378 (+)
XLOC_029970 acacb coding upstream 93861 19337108 ~ 19383694 (+)
XLOC_029976 mvk coding downstream 6064 19494198 ~ 19509695 (+)
XLOC_029977 fam222a coding downstream 223877 19712011 ~ 19752895 (+)
XLOC_029978 tchp coding downstream 379660 19867794 ~ 19879252 (+)
XLOC_029979 ankrd13a coding downstream 445222 19933356 ~ 19952944 (+)
XLOC_029980 NA coding downstream 473661 19961795 ~ 19965283 (+)
XLOC_029966 NA non-coding upstream 397639 19068184 ~ 19079916 (+)
XLOC_029963 NA non-coding upstream 439971 18822811 ~ 19037584 (+)
XLOC_029982 BX547941.1 non-coding downstream 589560 20077694 ~ 20077810 (+)
XLOC_029992 NA non-coding downstream 1054766 20542900 ~ 20546489 (+)
XLOC_029996 BX510312.1 non-coding downstream 1186799 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 1770084 21258218 ~ 21259238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_01089538_01096097 ALDH3B2 coding CI01000071 null 1089458 ~ 1096354 (-)