XLOC_002998 (taar20o)


Basic Information

Item Value
gene id XLOC_002998
gene name taar20o
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40453660 ~ 40454685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005512
AGCAAACTCCTAACAGGAGGAGACTCACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTCAAGGAAAAACACTCCAGACATGGATACATCACCACATATTTGTTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTCCACACTCCAACCAACATGATTATTCTCTCTTTGGCTGTAACTGATCTGCTTGTTGGACTAGTCATGCCCGTGGAGGCCATCAGACTGATTGAGACTTGTTGGTACTTTGGAGACACTTTCTGTGGactctatatattttttgtgtcaTTACTTCTTTCAGCATCTCTtggtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTTTACTGTATCCACAGAAAATAACCATCACGAAAACATTAATGAGTATCTGTCTGAGCTGGGCTGGTTTAACAGCTTATATCATTACCCTTGTAATTAACAATAGCTATTTTGACTCTTCACATAGAACAGATGTGTGTTATGGACAGTGTTTATACATGATAAGTTATAGTTGGATACTCACTGAACTGTTTATGTCTTTTATTTTTCCCTGTGTTCTGATCATCACTTTATATCTGAGGATTTTCTATGTTGTTCATCAGCAAGTGAAGGTTATAAACTCTTTGATGAAGGGTGGTAAATGTGTAACGGAGGGTTCAGTGAAGAGGAAATCTGAGAGTAAAGCTGCTCTGACTTTAGGAATCATTGTGTCAGTGTATCTGCTTTGCTGGATTCCATATTTTATCTATTCTTTAACTGTAAACTCTTCCACAACTATAAATGGTTTATTATTTGCCGTGTTTGCTAACTCAGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAGaagacagctaaactcatcttaACTCTGAAAATAGTTCATTCTGCATCTTCTCTGATCAATATTTTTACAGAACAT

Function

symbol description
taar20o Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060414-4 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000112373

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005512 True 1026 mRNA 0.38 1 40453660 40454685

Neighbor

gene id symbol gene type direction distance location
XLOC_002997 taar20p coding downstream 4900 40447708 ~ 40448760 (-)
XLOC_002996 taar20q coding downstream 9914 40442694 ~ 40443746 (-)
XLOC_002995 taar20r coding downstream 23913 40428695 ~ 40429747 (-)
XLOC_002994 taar20w coding downstream 32601 40420052 ~ 40421059 (-)
XLOC_002993 BX530037.4 coding downstream 34601 40418807 ~ 40419059 (-)
XLOC_002999 taar20b1 coding upstream 7184 40461869 ~ 40462894 (-)
XLOC_003000 BX530037.2 coding upstream 13687 40468372 ~ 40469394 (-)
XLOC_003001 si:dkey-181m19.11 coding upstream 16944 40471629 ~ 40471895 (-)
XLOC_003002 taar20z coding upstream 17597 40472282 ~ 40484640 (-)
XLOC_003003 taar20d1 coding upstream 24243 40478928 ~ 40479911 (-)
XLOC_002989 AL953903.3 non-coding downstream 49329 40403994 ~ 40404331 (-)
XLOC_002985 AL953903.1 non-coding downstream 69228 40383782 ~ 40384432 (-)
XLOC_002983 AL953903.2 non-coding downstream 77664 40375010 ~ 40375996 (-)
XLOC_002973 NA non-coding downstream 1363572 39087325 ~ 39090088 (-)
XLOC_003004 NA non-coding upstream 34952 40489637 ~ 40490637 (-)
XLOC_003005 NA non-coding upstream 43474 40498159 ~ 40499209 (-)
XLOC_003009 BX530037.3 non-coding upstream 62064 40516749 ~ 40517598 (-)
XLOC_003010 CR396590.6 non-coding upstream 66138 40520823 ~ 40521100 (-)

Expression


Co-expression Network