XLOC_002999 (taar20b1)


Basic Information

Item Value
gene id XLOC_002999
gene name taar20b1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40461869 ~ 40462894 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005513
aacaaactcctaACAGGAGGAGACTCACTCATGGCCTACGTGACAGAGGATCAGGAGACTCAATACTGCTTTCCTAACATCAACTCATCATGTGTGAAGAAGAAACACTCCAGAAATGGATATCACATCATCTATGTGTTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAACCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGACTGTAAATGATCTGTTTATTGGACTCATCATGCCTGTAGAGGCCATCAGACTGATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTGGCCtccatatattatttatttcacttCTGGTGTCAGCATCTTttagtaattttgttttaattgctCTTGACCGATATGTTGCTGTGTGTCACCCTCTACAGTACCCACAGAAAATAACCATCACTAAAACACTTATGAGTATCTGTCTGAGCTGGCTTTGCCTCTCAGCTTATATCACTGCCTATGTATTTAATAATGGATATTTTGACTCTTCACACAGAACAGATGTGTGTTATGGACAGTGTTCAGTCATGATAAGTTTTAGTTGGTCAGTCACTGATCtgataatttcttttatttttccttgTGTTCTGATCATCACTTTATATTTGAGGATTTTCTATGTCGTTCATCAGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAATGTGTAACGGAGGGTTCAGTGAAGAGGAAATCTGAaagtaaagctgctctgactTTAGGGATCATtgtgtctgtttatctgttttgcTATATTCCATACTATATCTGTTCTCTAACTGTAAACGCTACCACaatcataaatgttttgttattactTGTGTATGCTAACTCTGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAAAGAACAGCTAAAGTAATTTTAACTTTGAAAATATTTCAATCAGCATCCTCTCTGATCAATATTTTTacacaaaat

Function

symbol description
taar20b1 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060413-5 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000112935

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005513 True 1026 mRNA 0.38 1 40461869 40462894

Neighbor

gene id symbol gene type direction distance location
XLOC_002998 taar20o coding downstream 7184 40453660 ~ 40454685 (-)
XLOC_002997 taar20p coding downstream 13109 40447708 ~ 40448760 (-)
XLOC_002996 taar20q coding downstream 18123 40442694 ~ 40443746 (-)
XLOC_002995 taar20r coding downstream 32122 40428695 ~ 40429747 (-)
XLOC_002994 taar20w coding downstream 40810 40420052 ~ 40421059 (-)
XLOC_003000 BX530037.2 coding upstream 5478 40468372 ~ 40469394 (-)
XLOC_003001 si:dkey-181m19.11 coding upstream 8735 40471629 ~ 40471895 (-)
XLOC_003002 taar20z coding upstream 9388 40472282 ~ 40484640 (-)
XLOC_003003 taar20d1 coding upstream 16034 40478928 ~ 40479911 (-)
XLOC_003004 NA coding upstream 26743 40489637 ~ 40490637 (-)
XLOC_002993 BX530037.4 non-coding downstream 42810 40418807 ~ 40419059 (-)
XLOC_002989 AL953903.3 non-coding downstream 57538 40403994 ~ 40404331 (-)
XLOC_002985 AL953903.1 non-coding downstream 77437 40383782 ~ 40384432 (-)
XLOC_002983 AL953903.2 non-coding downstream 85873 40375010 ~ 40375996 (-)
XLOC_002973 NA non-coding downstream 1371781 39087325 ~ 39090088 (-)
XLOC_003005 NA non-coding upstream 35265 40498159 ~ 40499209 (-)
XLOC_003009 BX530037.3 non-coding upstream 53855 40516749 ~ 40517598 (-)
XLOC_003010 CR396590.6 non-coding upstream 57929 40520823 ~ 40521100 (-)

Expression


Co-expression Network