XLOC_029980


Basic Information

Item Value
gene id XLOC_029980
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19961795 ~ 19965283 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061681
gtgtgtatgaaagtgtatgagtgtttcccagtattgggttgcagctggaaggacatccgctgtgtaaaacatttgctggataagttggcgattcattccactgaggcgaccccttataaaggaactaagctgaaggaaaatgaatgactgaatgaaaaacCGATTTCACTGCACATTCGATTCGTACAGATTGAGGTTTCGACTTTCATTTATTAGTTCAGACATGTCAAAACCATTCAGATaaacttaataatataaatacaatataatcacataaaaatataaaaatagtatcaaatcatacataaaaaaaaatcacactgtaaacaatttaatAGCTTAGCAgcagatatatacactagatatctcATAGGGACTCTGAGCATGCATCAATAACgtcgccatattggtacagtgctccaaggacaaaagtcattcaaccgcaccagtcaagactaaagccgatctgaagatgctggacttttgcacagtgtacaggtgtagtaacaagcaaacaaaacataaaattaaattggaaagatttcattttttataattttgtatgTTAAAAACTTTTGTGTAGTAATGTTATTGATGACACTTACTGCactgaaaaaacagctaaatcctaggcgtatgctagttttgttgaataaaatcagcaaacaatgtaaataaaatatgagaACAAGACACTGtggtgctagaaacttgtattattgtcggctaagtgaagtaATGGCTGTTTTTGAAGTAATCTATAAGGCTGCCTAACATAACAGTGCCTGCGCCACACTGTGCATACTGTCCACCATAAATCATGACCAGTCCTctactgcaccttggtcccacattcgtTTCAAAGGAGctctaccctgtactaaaatggcagctctattaaCACATTCCTTCAATACAACATAAAttgtaggcgacatctaatgtaaacatCTATGGCTGCAAATAATCAAACAATcctaaacatgtttaaaatagtGATTCagtttaaaaacttaaattataatgTTTAACTTTACAGTTAAAGTTCTACTCTCGTTTGATTGGATTTTATGATTTGAGGACTCTGTTTCTAATTGTATTTTGAATATTCATTTGGTCGAGCTGACGTTGATTCGTAACCTTCCAATAGTAACCCTGCATCCAGAATATTTAGTAGTTCGTGTTGACGTTGCGCTGTTTGTGTCCAATAGCGAAAGCTTGGCTCATTAATATTCAGAATCAGGCCTTCGCCATAGTAATGTTCAACTCCAGGCGTCTTGAATCCACATTGGGCCAGTCAGTCACCTGCGTCGGAGAGGTCACATGCAGTCTGTCACTCGCTACAGCCTTTTCCACGCAACTCTTGGTCTTTCATTTTGGTAATTAACAGAAGAGGACAGAGCCTGCAGGCCTTTTGTTAGGCTCCTCTGTAGTTGAATCTGTGGTCCACCTCTCCTCCAGTCGCCTGCACTGAAGCCTTTGATCCATTCTGCGGCCTCTGCTAAAAGTGGCTGAATGAGGAATAGCATTATCTTTTCTCTATTCTCTCACCCTATACCTGAAACTGGCACAACTGAGCGCCGTTTCCCAGAGCTGTGATTGGTGGCGATTGAAGATCTGGTCTTTAATAAAACATCTCATTTAAATGCCTGACACAATGCTGTTCTCTTGGCCCTTGTATGTCTACAGATGCTGGATACTGCAGCTTAATGCAAATCAACATGTTAATTAAAGAGCAACTGTGCAAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061681 True 1750 lncRNA 0.39 2 19961795 19965283

Neighbor

gene id symbol gene type direction distance location
XLOC_029979 ankrd13a coding upstream 8851 19933356 ~ 19952944 (+)
XLOC_029978 tchp coding upstream 82543 19867794 ~ 19879252 (+)
XLOC_029977 fam222a coding upstream 208900 19712011 ~ 19752895 (+)
XLOC_029976 mvk coding upstream 452100 19494198 ~ 19509695 (+)
XLOC_029975 aldh3b2 coding upstream 473661 19477555 ~ 19488134 (+)
XLOC_029981 sgsm1a coding downstream 65131 20030414 ~ 20093196 (+)
XLOC_029982 BX547941.1 coding downstream 112411 20077694 ~ 20077810 (+)
XLOC_029983 gatc coding downstream 137802 20103085 ~ 20108469 (+)
XLOC_029984 isg15 coding downstream 146749 20112032 ~ 20113284 (+)
XLOC_029985 svopa coding downstream 182547 20147830 ~ 20165688 (+)
XLOC_029972 NA non-coding upstream 555857 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 558417 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 881879 19068184 ~ 19079916 (+)
XLOC_029963 NA non-coding upstream 924211 18822811 ~ 19037584 (+)
XLOC_029992 NA non-coding downstream 577617 20542900 ~ 20546489 (+)
XLOC_029996 BX510312.1 non-coding downstream 709650 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 1292935 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 1305167 21270450 ~ 21271359 (+)
XLOC_029964 NA non-coding upstream 1135030 18824394 ~ 18826765 (+)

Expression


Co-expression Network