XLOC_029986 (ssh1a)


Basic Information

Item Value
gene id XLOC_029986
gene name ssh1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20255568 ~ 20289292 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058699
atgtctttggactgtggggggaaccggagcacccagaggaaacccacacgaacacaGTTAAATGTAGTATgtctttcatatttaataaacCTCCTGCATCTTTTTTGCTCTCTGTCTTGCAGTCTGAGCGAGAGTTTCTTCATGGTGAAGGGAGCCGCTCTGTTTCTGCAGCAGGGCAGTTGTCCACAGGCTCAGAGAGCTCATCCTCACCACAAACATGCAGGTGACTTGCCTCAGCATCTTCAGGTGATGATCAACATTCTTCGGTCTGAGGATCGCATCAAACTGGCGGTGCGTTTGGAGAGCGCGTGGTCAGACCGTGTGAGGTACATGGTGGTGGTTTACACAAATGGCCGACAAGACACTGAAGAAAACATCTTATTGGGCATGGACTTCAGCAACAAAGACAGTAAGAATTGCTCTGTCGGGATGGTGCTGCCGCTGTGGAGTGACACCAAGATTCATTTAGACGGTGACGGGGGTTTCAGTGTGACGACCGCCGGGCGTACGCACATCTTCAAACCGGTGTCAGTCCAGGCCATGTGGTCAGCTTTGCAAATTTTACACAAGGCCTGTGAGGTGTCACGGCGGTACAACTATTTCCCTGGTGGGATGGCACTGACGTGGATGGGGTACTATGAGAGCTGCATCAGCTCTGAACAGAGCTGCATCAATGAGTGGAACGCCATGCAGGACCTGGAAACACTGAGACCAGACTCGCCTGTAGTCTTTGTCGACAAGCCAACAGAGAGGGAGAGAACAGAATGTCTAATCAAAGCCAAACTCAGGAGTATCATGATGTGCCAGGACCTTGAAAATGTCACGTCCAAAGAGATTCGTAATGAGTTGGAGCAGCAGATGAACTGTAACCTGAAAGAGTACAAAGAGTTCATAGACAATGAGATGCTACTTATTCTTGGCCAGATGGATAAAGCCACTCTCATCTTTGACCACCTTTATCTGGGTTCTGAATGGAACGCTTCCAATCTAGAGGAActtcaggaaagtggGGTGGGCCACATCTTAAATGTCACAAGGGAAATAGATAACTTTTTCCCAGGAACATTCTGCTACCACAATGTCAGAGTGTATGATGATGAGGCCACAGACTTACTGGCTCACTGGAATGATACCTACAACTTCATTGTCAAAGCAAAAAAGAATCATTCCAAATGTTTGGTTCACTGTAAGATGGGCGTAAGCCGCTCTGCTTCCACGGTGATCGCATATGCCATGAAAGAGTACGGCTGGACTCTGGAGAAAGCATATAACTTTGTTAAACAGAAGCGCAGTATCACTCGTCCCAATGCCAGCTTCATGAGACAGCTGGCAGAGTATGAAGGCATACTGGATGCCAGTAAGCAGCGTCATAACCGTCTGTGGCGCCCTGATTCGGATTGCGATCACCCCGAGTGCCAGCAAGCTGCTGGTCCTTGCTATCTGAATGCAGAGACTGGAGATCACATCACTCCTGACTCCACAACCCCCAGGGTCACTGTCTGCTGTGAGCCTACAGCCCACTCCTCTCCAATTAGTCTAGATCTGGATCCTGGCCATCCACAAAATTACCACTACTACTTCCGCCGCTTGTCAGACTCGGCTCTAGAGAGCGAACCTTCCACCCCTGTCCAAGCACAGCCTTTGGTGGATGTTGCCGATGTGGAGCAAGATGCACTTCTTGAGGATGAAACCTTCGAGGCACATGAGGGAGAGGGTATTGGCGCTCAAACATGTTCTCGAGGACCGGAGCCACTAGAAGAACTACGTCTGCGGTTGGAGTTCAGCACAGTGGAAGAAGAGGATGAAGAAGAGGCTCAGAAAGAGCAAGCTGAGATGGAGGCGTTAACAGAGGAAGCAAAGAGAGTAGATGGGAAGGATAGTGAGGAGCTGTTGAATGAAAAGGGGATCGATCTGACCAGTGTGAACCATTTGTGCAatgagaacaacaacaacaatcaccTCAAAATGCAACAAATCCTCACTGTGAGTATCTTACTTGCCCACATAAAGTATTAG
>TCONS_00058700
TCTGAGCGAGAGTTTCTTCATGGTGAAGGGAGCCGCTCTGTTTCTGCAGCAGGGCAGTTGTCCACAGGCTCAGAGAGCTCATCCTCACCACAAACATGCAGGTGACTTGCCTCAGCATCTTCAGGTGATGATCAACATTCTTCGGTCTGAGGATCGCATCAAACTGGCGGTGCGTTTGGAGAGCGCGTGGTCAGACCGTGTGAGGTACATGGTGGTGGTTTACACAAATGGCCGACAAGACACTGAAGAAAACATCTTATTGGGCATGGACTTCAGCAACAAAGACAGTAAGAATTGCTCTGTCGGGATGGTGCTGCCGCTGTGGAGTGACACCAAGATTCATTTAGACGGTGACGGGGGTTTCAGTGTGACGACCGCCGGGCGTACGCACATCTTCAAACCGGTGTCAGTCCAGGCCATGTGGTCAGCTTTGCAAATTTTACACAAGGCCTGTGAGGTGTCACGGCGGTACAACTATTTCCCTGGTGGGATGGCACTGACGTGGATGGGGTACTATGAGAGCTGCATCAGCTCTGAACAGAGCTGCATCAATGAGTGGAACGCCATGCAGGACCTGGAAACACTGAGACCAGACTCGCCTGTAGTCTTTGTCGACAAGCCAACAGAGAGGGAGAGAACAGAATGTCTAATCAAAGCCAAACTCAGGAGTATCATGATGTGCCAGGACCTTGAAAATGTCACGTCCAAAGAGATTCGTAATGAGTTGGAGCAGCAGATGAACTGTAACCTGAAAGAGTACAAAGAGTTCATAGACAATGAGATGCTACTTATTCTTGGCCAGATGGATAAAGCCACTCTCATCTTTGACCACCTTTATCTGGGTTCTGAATGGAACGCTTCCAATCTAGAGGAActtcaggaaagtggGGTGGGCCACATCTTAAATGTCACAAGGGAAATAGATAACTTTTTCCCAGGAACATTCTGCTACCACAATGTCAGAGTGTATGATGATGAGGCCACAGACTTACTGGCTCACTGGAATGATACCTACAACTTCATTGTCAAAGCAAAAAAGAATCATTCCAAATGTTTGGTTCACTGTAAGATGGGCGTAAGCCGCTCTGCTTCCACGGTGATCGCATATGCCATGAAAGAGTACGGCTGGACTCTGGAGAAAGCATATAACTTTGTTAAACAGAAGCGCAGTATCACTCGTCCCAATGCCAGCTTCATGAGACAGCTGGCAGAGTATGAAGGCATACTGGATGCCAGTAAGCAGCGTCATAACCGTCTGTGGCGCCCTGATTCGGATTGCG

Function

symbol description
ssh1a Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH1 (slingshot protein phosphatase 1).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0003779 actin binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-201 Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH1 (slingshot protein phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000056780

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058699 False 2016 mRNA 0.49 15 20255568 20289292
TCONS_00058700 True 1280 mRNA 0.49 12 20257225 20288636

Neighbor

gene id symbol gene type direction distance location
XLOC_029985 svopa coding upstream 89880 20147830 ~ 20165688 (+)
XLOC_029984 isg15 coding upstream 142284 20112032 ~ 20113284 (+)
XLOC_029983 gatc coding upstream 147099 20103085 ~ 20108469 (+)
XLOC_029981 sgsm1a coding upstream 162372 20030414 ~ 20093196 (+)
XLOC_029982 BX547941.1 coding upstream 177758 20077694 ~ 20077810 (+)
XLOC_029987 coro1ca coding downstream 30227 20319519 ~ 20419863 (+)
XLOC_029988 selplg coding downstream 132247 20421539 ~ 20423541 (+)
XLOC_029989 tmem119a coding downstream 139546 20428838 ~ 20437783 (+)
XLOC_029990 si:ch211-191d15.2 coding downstream 152361 20441653 ~ 20442314 (+)
XLOC_029991 sart3 coding downstream 164582 20453874 ~ 20481389 (+)
XLOC_029980 NA non-coding upstream 290285 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 849630 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 852190 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 1175652 19068184 ~ 19079916 (+)
XLOC_029992 NA non-coding downstream 253608 20542900 ~ 20546489 (+)
XLOC_029996 BX510312.1 non-coding downstream 385641 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 968926 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 981158 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 984873 21274165 ~ 21278501 (+)

Expression


Co-expression Network