Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058699 |
| length | 2016 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 15 |
| gene id | XLOC_029986 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 20255568 ~ 20289292 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006470 | protein dephosphorylation | biological_process |
| GO:0030837 | negative regulation of actin filament polymerization | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0016791 | phosphatase activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040724-201 | Predicted to enable actin binding activity and phosphoprotein phosphatase activity. Predicted to be involved in actin cytoskeleton organization and negative regulation of actin filament polymerization. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human SSH1 (slingshot protein phosphatase 1). |
| ensembl_id | ENSDART00000153643 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061681 | lncRNA | upstream | 290285 | 19961795 ~ 19965283 (+) | True | XLOC_029980 |
| TCONS_00061427 | lncRNA | upstream | 849630 | 19404532 ~ 19405938 (+) | True | XLOC_029972 |
| TCONS_00061680 | lncRNA | upstream | 852190 | 19400399 ~ 19403378 (+) | True | XLOC_029971 |
| TCONS_00061426 | lncRNA | upstream | 1175652 | 19068184 ~ 19079916 (+) | True | XLOC_029966 |
| TCONS_00061679 | lncRNA | upstream | 1428803 | 18824394 ~ 18826765 (+) | True | XLOC_029964 |
| TCONS_00061682 | lncRNA | downstream | 253608 | 20542900 ~ 20546489 (+) | False | XLOC_029992 |
| TCONS_00058709 | lncRNA | downstream | 253700 | 20542992 ~ 20546489 (+) | False | XLOC_029992 |
| TCONS_00061428 | lncRNA | downstream | 255404 | 20544696 ~ 20545951 (+) | True | XLOC_029992 |
| TCONS_00058718 | lncRNA | downstream | 554685 | 20843977 ~ 20845423 (+) | True | XLOC_029998 |
| TCONS_00061429 | lncRNA | downstream | 995750 | 21285042 ~ 21285547 (+) | True | XLOC_030008 |
| TCONS_00058697 | mRNA | upstream | 89880 | 20147830 ~ 20165688 (+) | False | XLOC_029985 |
| TCONS_00058698 | mRNA | upstream | 89880 | 20148671 ~ 20165688 (+) | True | XLOC_029985 |
| TCONS_00058696 | mRNA | upstream | 142284 | 20112032 ~ 20113284 (+) | True | XLOC_029984 |
| TCONS_00058695 | mRNA | upstream | 147099 | 20103085 ~ 20108469 (+) | True | XLOC_029983 |
| TCONS_00058691 | mRNA | upstream | 162372 | 20030414 ~ 20093196 (+) | False | XLOC_029981 |
| TCONS_00058701 | mRNA | downstream | 30227 | 20319519 ~ 20419863 (+) | False | XLOC_029987 |
| TCONS_00058702 | mRNA | downstream | 77161 | 20366453 ~ 20416266 (+) | True | XLOC_029987 |
| TCONS_00058703 | mRNA | downstream | 132247 | 20421539 ~ 20423541 (+) | True | XLOC_029988 |
| TCONS_00058704 | mRNA | downstream | 139546 | 20428838 ~ 20437567 (+) | False | XLOC_029989 |
| TCONS_00058705 | mRNA | downstream | 147832 | 20437124 ~ 20437783 (+) | True | XLOC_029989 |
| TCONS_00058694 | other | upstream | 177758 | 20077694 ~ 20077810 (+) | True | XLOC_029982 |
| TCONS_00058672 | other | upstream | 1120658 | 19133436 ~ 19134910 (+) | False | XLOC_029967 |
| TCONS_00058656 | other | upstream | 3226154 | 17029298 ~ 17029414 (+) | True | XLOC_029952 |
| TCONS_00058647 | other | upstream | 4512315 | 15743137 ~ 15743253 (+) | True | XLOC_029945 |
| TCONS_00058637 | other | upstream | 5613299 | 14642152 ~ 14642269 (+) | True | XLOC_029938 |
| TCONS_00058714 | other | downstream | 385641 | 20674933 ~ 20675050 (+) | True | XLOC_029996 |
| TCONS_00058725 | other | downstream | 968926 | 21258218 ~ 21259238 (+) | True | XLOC_030005 |
| TCONS_00058726 | other | downstream | 981158 | 21270450 ~ 21271359 (+) | True | XLOC_030006 |
| TCONS_00058727 | other | downstream | 984873 | 21274165 ~ 21278501 (+) | True | XLOC_030007 |
| TCONS_00058738 | other | downstream | 2029557 | 22318849 ~ 22327098 (+) | True | XLOC_030021 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000339_00014867_00022451.mRNA | True | 4930 | mRNA | 0.44 | 13 | CI01000339 | 13126 ~ 22658 (+) |
