XLOC_030013


Basic Information

Item Value
gene id XLOC_030013
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22007779 ~ 22008067 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061430
ttcagtgtagttgtaACAAGAAAACTGTTGGAAACATGTTGTTTGAAAGTTTTGGCACATGCTGAAAGTAACCACACAGAATCGGAAGTTCTATGTTTATTCAAGAGTGCTGTTTTTTTTCAACTTGTATAAAAACATTGGTGATTAACACCAATATTATgatttgattttactttttaaaagtgtgtaaacccgttgcttttaaagtgattagttgacttcaaaaaaagtgagtaaacctgttgccttaaaattaagcaaattaactttgtgcataattataaaatta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061430 True 289 lncRNA 0.29 1 22007779 22008067

Neighbor

gene id symbol gene type direction distance location
XLOC_030012 si:ch73-92i20.1 coding upstream 75588 21931124 ~ 21932191 (+)
XLOC_030011 si:ch73-92i20.1 coding upstream 79583 21922534 ~ 21928196 (+)
XLOC_030010 si:ch73-92i20.1 coding upstream 98697 21891305 ~ 21909082 (+)
XLOC_030009 sh2d1aa coding upstream 713674 21288227 ~ 21294105 (+)
XLOC_030008 NA coding upstream 722232 21285042 ~ 21285547 (+)
XLOC_030014 shisa2a coding downstream 59503 22067570 ~ 22070229 (+)
XLOC_030015 NA coding downstream 77470 22085537 ~ 22094364 (+)
XLOC_030016 zc3h12b coding downstream 90524 22098591 ~ 22106594 (+)
XLOC_030017 msna coding downstream 125086 22133153 ~ 22174037 (+)
XLOC_030018 fdx1b coding downstream 168966 22177033 ~ 22226645 (+)
XLOC_030007 BX470224.1 non-coding upstream 729278 21274165 ~ 21278501 (+)
XLOC_030006 BX470224.2 non-coding upstream 736420 21270450 ~ 21271359 (+)
XLOC_030005 BX470224.3 non-coding upstream 748541 21258218 ~ 21259238 (+)
XLOC_029996 BX510312.1 non-coding upstream 1332729 20674933 ~ 20675050 (+)
XLOC_030019 NA non-coding downstream 223147 22231214 ~ 22234694 (+)
XLOC_030023 NA non-coding downstream 388407 22396474 ~ 22404667 (+)
XLOC_030032 NA non-coding downstream 862244 22870311 ~ 22892701 (+)
XLOC_030033 NA non-coding downstream 862851 22870918 ~ 22874128 (+)

Expression


Co-expression Network