XLOC_030009 (sh2d1aa)


Basic Information

Item Value
gene id XLOC_030009
gene name sh2d1aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21288227 ~ 21294105 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058728
ATGGAGGATTTGGCAGAATATCATGGGTCAATCAGTAAGAAGCAGGCAGAAGACATCCTGTGCTCCACGGGCAGAGATGGCAGCTATCTGATCAGAGACAGTCTGAGCTCCGCCGGCGCTTACTGCGTGTGTGTGCTGTGTGATGGATGGGTTTACACCTACAGAATTTTCAATAAGGGCGGCCTCTGGACAATAGAGatGGCTCCTGGAATGAAGGAACGACTCTTTAGAAATGTCAGTAACCTCATTGCTGCCTTTAAGATGCCAGACCAAGGCATCACTTTTCCTCTTCTGTATCCTGTGAACAAACCTAAACATTAA

Function

symbol description
sh2d1aa Human ortholog(s) of this gene implicated in X-linked lymphoproliferative syndrome 1. Orthologous to human SH2D1A (SH2 domain containing 1A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-212 Human ortholog(s) of this gene implicated in X-linked lymphoproliferative syndrome 1. Orthologous to human SH2D1A (SH2 domain containing 1A).

Ensembl:

ensembl_id ENSDARG00000095348

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058728 True 321 mRNA 0.47 3 21288227 21294105

Neighbor

gene id symbol gene type direction distance location
XLOC_030008 NA coding upstream 2680 21285042 ~ 21285547 (+)
XLOC_030007 BX470224.1 coding upstream 9726 21274165 ~ 21278501 (+)
XLOC_030006 BX470224.2 coding upstream 16868 21270450 ~ 21271359 (+)
XLOC_030005 BX470224.3 coding upstream 28989 21258218 ~ 21259238 (+)
XLOC_030004 si:dkey-13n15.11 coding upstream 38466 21225017 ~ 21249761 (+)
XLOC_030010 si:ch73-92i20.1 coding downstream 597200 21891305 ~ 21909082 (+)
XLOC_030011 si:ch73-92i20.1 coding downstream 628429 21922534 ~ 21928196 (+)
XLOC_030012 si:ch73-92i20.1 coding downstream 637019 21931124 ~ 21932191 (+)
XLOC_030013 NA coding downstream 713674 22007779 ~ 22008067 (+)
XLOC_030014 shisa2a coding downstream 773465 22067570 ~ 22070229 (+)
XLOC_029996 BX510312.1 non-coding upstream 613177 20674933 ~ 20675050 (+)
XLOC_030015 NA non-coding downstream 791432 22085537 ~ 22094364 (+)
XLOC_030019 NA non-coding downstream 937109 22231214 ~ 22234694 (+)
XLOC_030023 NA non-coding downstream 1102369 22396474 ~ 22404667 (+)
XLOC_030032 NA non-coding downstream 1576206 22870311 ~ 22892701 (+)

Expression


Co-expression Network