XLOC_030004 (si:dkey-13n15.11)


Basic Information

Item Value
gene id XLOC_030004
gene name si:dkey-13n15.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21225017 ~ 21249761 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058724
GCCTAGTTATGTGTCTTTAAAGAGTGACAGATCAATGGCTGAACCACCTAAATTCAGTGACGAAGCGAAACATTTTCCACTCAGTCATTCAGAGAAAGAGGAGCAGAAATGTGCTGTTCACTACCAGTTCCAGGGTGCAGCATCATCTCTACCAAGCAATGTGTCTTTAAAGAGTGACAGATCAATGGCTGAACCTCCTAAATTTAGTCATGTAGCTCAACATTTGCAGTCCAGtctttcagaAAAAGTAGAAGTCTGTGCTGTTCACCATCGGAGACTGTCATCTACAATATCAAGCTATGTGTCTTTAAAGAGTGACAGGTCTATGGCTGAACCTCCTCGATTCAGTGATGCATCAGAACAATTTAAATATGGccACAGGGTAGTTCAAGATCAGCCTGAGTGCCCACAGCCAGGGTCCAGTTCTGCTGGAGAGCAGCTCAACATTTTCCAATCAGTAGATGAAATCTCTCAGCGTATCAAAGAGCATCACAAAACCAGCATAAAGCAGAAGTATGAGAGTTTATGCGAAGGATTcaacaaacaagaaaacaaaacccTCCTGAATAAGATTTACACACAGCTTTATATaatagagggagagagagaaggggtgaatgaagaacatgaggttgtGCAAATTGAAAAGGCCAAGACTGAACGCTTACAAGGCACTCCAATTAACTGCAATGACATTTTTCAGCCCGTACATGATCCATGTTATGGAAGAAGTGATGAGAAAGACAAAGTGAGGACTGTTCTCACCAAAGGAATTGCTGGAATTggaaaaaccgtctctgtgcagaagttcattctggatTGGGCTGAGGGAAAAGCAAATCAGGATGTCGATTTTCTCTTTGTTCTTCCATTTCGGGAACTTAACTTAGTTAAAGATGACCAATACAGTCTTCACAAACTTCTGCTTGACTTTCATCCAGAACTTTTGGAGATAAACACTAGGATTTATGATTTATGTAAAGTCTTGTTtgtctttgatggtctggatgaaagtaGAATTACCCTGACATTTTCACACTGTGAGAAGATTTCTGATGTGTCCACAAGCTCATCTGTGAGCATGTTGTTGTCAAATCTCATCAAGGGGGAGTTGCtgccctctgctctcatctggatcacatcCAGACCCGCAGCAGCCAGCCATATCCCCTCACATTACATCAGCCGTGTGACAGAAGTGCAAGGATTCAGTGACCCTCaaaaggaggaatatttcaggaagaggaTCAGCAACCAGGATCaggccagcagaatcatctcacaCATTAGAGCAGCAAGAAGCCTTCACATAATGTGCCATATACCGGTCTTCTGCTGTATCACAGCCACTGTGCTTCAGAACATCCTGGAACAGGATCTCAGTGCAGAAATCCCTAAAACATTAACAGAGATGTACATACATTTTCTGATCATCCAGACGGATGTGAAGAGGCAGAAGTTTGATCAGAATGTCGAGGGAATTGAGAAAGATCTAAAATTGCTGCTGGAGGCAAGCAGAGATTTGATATTGAAACTTGCTGAACTGGCTTTCAAAGGTCTGATGAATGGTCATGTCCTGTTTTATGATGAGGACCTGAAAGCGTGTGGCATAGATGTCAATGAGGCCTGTGTGCACTCCGGGTTTTGCACTGAGTTCTTTGATGAGGAATCTGTGATCAAGTCAAGGAAGGTCTACTGCTTTGTTCATTTGAGCTTTCAAGAGTTTTTTGCAGCACTTTTTGTGTTTTCCAGCTATCTGAACAAGAGCAGTGATGTCCTGAAGATATTCCAAAAGAAGAAAGGGAGAAGAAAGGTCAAACTGCAGTCTGATGAGGTTTCGCTGGATGTGTTTCTGAATGGTGTGGTGGATGAAGCACTGAAGAGTGATAATGGACATCTGGATCTTTTCCTTAGATTTCTTCATGGCCTCTTGCTGGAGTCAAATCAGAGACTTCTCCAAGGTCTGCTCACACACATGGAGGACGACCCTGAAAGCATGACAAAAGCGATGAAAAACCTCAAACAGAGTCAAAAGCAGAATGTTAGACCAGAAAGGTGGATTAATCTGTCACACTGCCTAATTGAAATGAAGGACACTTCTGTTTCTGAGGATATTCAGGCGTACCttaaaaatgaaggaaaaagaaaaatatatttgtctTCCCCCCACTGTTCAGCGCTGGCTAACATGCTTCTGATGGCAGAGGATGTGCTGGAAGAGCTAGACCTCAAGAAATACAACACAACATCCATGCAGGCTCTGAGGAGACTGATACCAGCTGTGAGGAACTGCAGAAAGGCAATATTGGTAGGCTGTAATCTCACTGAACAATCATGTGAAACTGTGGCATCGGCTCTGCAGCCAGCCAACTCCCCAGTGAGAGAGCTGGAcatgagtaacaatgacctgcaggactCGGGTGTAAAACTCATTTCTGTTGGACTCAAGAGttcacactgtaaactggagatacTGAGATTGAAATGTTGTAAACTCACCATGCAGTGCTGTGAAACGGTGGCTTCAGCTCTGCTGTCAGCAAATTCAcgcctgagagagctggacctcaGTTACAATGagctgcaggattcaggagtagAGTGGCTCGCTGCTGGACTAAAAAGCccacactgtaaactggagatatTGAGTTTGTCTGGCTGTAAACTCACTAGTCAGTCCTGTGAAGTGCTGGCCTCAGTTTTACAGTCAGAGGGCTCCCGACTCGGACAGCTGGATCTGAATAataatgacctgcaggattcaggactGGAGTTGCTCTCTGCTGGACTGAAAATCTGTAAACTGGAAAAACTAAGgTTGGCCACCTGTAATCTCACTAGTCAGTCCTGTAAAACGATGGCCGCTAGTCTTCAGTCAGTAAACTGTGTCCTGAAAGAGCTGGatctgagtaacaatgacctgcaggattcaggagtagAGATTCTGTCAGCTGGACTAAAGAGCccacactgtaaactggagatacTGAGATTGTCCATTTGTAATCTCTCTGATCGGTCGTGTGCAACAGTGGCTTCAGTTTTACAGTCAGCAAATTGTTTGAGAGAGCTGAACTTGAGCAaaaatgacctgcaggattcaggagtgaagatgCTCTCAGATGGACTGAAGAGTTCATTATGTGTACTGGAGATACTGAGAATGTCTGGCTGTTTTATCACAGAGGACGGCTGTTCAGTGCTGGCTTCAGTTCTGAATTCAAAACCTACACATCTAAGAGAGCTGGACCTCAGCTGTAATCATCCAGGAGACTTGGGTGTTCAGCTACTCACGGCTAGACTGAATGATCAAACCTGTAAATTGGAGATACTCAAtTTGGAACATGAGGGCAAGTTTAGGATCGCAGCTGGTTTACGAAGATATGCTTGTGACCTCACCCTGGACCCcgatacagcacacacacatctgtctCTATCTGATGGAAACAGAACGGTGACGCATGTAGCAGAGGAACAGTCCTATCCCGATCATCCTGACAGGTTTGAGTGCTGTCCTCAGGTTCTGTGTGCTGAGAGTCTGCGTGGACGCTGCTCATGGGAGGCTGAGTGGAGCGGGAAAAGCGGAGTCTACATTTCAGCCTCATATAAAGGCATCAGAAGGAAAGGACAGAGCGATGATTGTGAGTTTGGATCTAATGACAAATCCTGGAGACTTGTCTGCTCTGATAACAGCTTTTTAGCCTGGCACAATAATGAGAGAACTAAAATGCGTCCGCCTTCATCCTCATCTCGCTCTAAAAGGGTCGGGGTGTATTTGGACTGGCCAGCTGGCACTTTGTCCTTCTACAGCATCTCTGACAAAAATAAactcacacacttgcacacatttTCCTCCACATTCTCAGAGCCTCTGTATGCAGGGTTTGGCCTTTATTCAGGAACCTCAGTGTCTCTGTGTCCTATAGAAACACAAAAAACTGTGGCAATGACATAAATACATTGTAAGATAGCAAGCACTTGGTTTACTTTTAGAAATTTTTA

Function

symbol description
si:dkey-13n15.11 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-295 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000078002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058724 True 4005 mRNA 0.44 12 21225017 21249761

Neighbor

gene id symbol gene type direction distance location
XLOC_030003 bmp10 coding upstream 10718 21211135 ~ 21214299 (+)
XLOC_030002 arhgap25 coding upstream 20948 21181047 ~ 21204069 (+)
XLOC_030001 cds2 coding upstream 52818 21144269 ~ 21172199 (+)
XLOC_030000 hs3st1l2 coding upstream 83927 21100356 ~ 21141090 (+)
XLOC_029999 si:dkey-174n20.1 coding upstream 296819 20922100 ~ 20928198 (+)
XLOC_030005 BX470224.3 coding downstream 8457 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 coding downstream 20689 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 coding downstream 24404 21274165 ~ 21278501 (+)
XLOC_030008 NA coding downstream 35281 21285042 ~ 21285547 (+)
XLOC_030009 sh2d1aa coding downstream 38466 21288227 ~ 21294105 (+)
XLOC_029996 BX510312.1 non-coding upstream 549967 20674933 ~ 20675050 (+)
XLOC_029992 NA non-coding upstream 678528 20542900 ~ 20546489 (+)
XLOC_029982 BX547941.1 non-coding upstream 1147207 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 1259734 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1819079 19404532 ~ 19405938 (+)
XLOC_030013 NA non-coding downstream 758018 22007779 ~ 22008067 (+)

Expression


Co-expression Network