XLOC_030003 (bmp10)


Basic Information

Item Value
gene id XLOC_030003
gene name bmp10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21211135 ~ 21214299 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058723
ATGGCTGGTAGCAGAAATCACTTTTGGATTATATTTTCATCTGCCACGTCTGCTTTATTGGCCTTTTTCCTGCTTTTCTGGGGGCCTTTCTGTGTGCAAAGTAGCCCCATCAGCTCCCCGGAGAGGCACCGCACTGCTCCAGGGTTGGATGATGGACATGGAGGCGTTTTGGATCCTTCACTCTTGGAGCAGGACAGTGAGGCGAACATGCAGAGCTTGATGGAGACCCTGAAGGGACAGTTTCTGCAGACTTTCAATCTGACCCGTCCCAGCTCTCCTGCGCATCAAGGGGCCACTCGTGTAGAGCCACCTGAGTATATGCTGGAACTCTACAACCGATTCGCCAATGACCGAACAGCAATGCCTTCGGCAAACATCATACGCAGCTTTAAAAATGAAGactccTCCTCATACAGTATGGGACCTAGTGGAGTGAGACGACACCCACTTCTCTTCAACGTATCAATCCCACACCATGAGAGAGTCACCACAGCTGAACTCCGACTGTACACTCTGGTCCAGACTGACCGCAACAAATATGCTGGTGTTGACCGAAAAGTGACCATATATGAGGTCAAACTGCTTGAAACGAACAGCAGCCAGCAAGTAAGAGGAGACGATGTTGATGGAGGAGATCAAGCGAGTAAAACGGAGCTGGTGGAGTTAGCATCTCGACAGGTTTATGGTACAGATAATGCATGGGAATCCTTTGACATGACCGCAGCCGTCCACCTTTGGCGGAAATCAGACTATGGGACCACGCACAAGCTGGAGGTCCACATAGCAAGTTTGGACTCTCAGAGTGTGGCCGAAGGTGAAAATATAAGCAATGCCATAGGGGGAGACATGGACATTGACACCAGCCCTGAGGACAAACACAAACCCTTAATGATTGTGTACTCTGATGACCAGAGCAGAGACCATCGTGGAGCAAAACGAGAGCTGAACGAGCTGATCCAGCACGAGACCAACAGGCCAGGCCTTCAAGACAACCTTGAGCTGGAGATGACGGGCCTCTGGGGTGACCTGGGACAAAAAGATGGCATTGAAGAAGATGAGCAGAGCGAGGAGGCTCTCCTACAGATGCGCTCCAACCTCATCTATGACACAGCATCTAGAATCAGACGCAATGCCAAAGGCAACCAATGTAAAAAGAGCTCCCTCTATGTGGACTTCAAAGACATTGGCTGGGACAGCTGGATCTTGGCGCCGACTGGTTATGAAGCCTTCGAGTGTACAGGGGTGTGCACATACCCTTTAACCAAAGACGTTACACCTACAAAACATGCAGTTATACAAACGTTGGTTAGTCTGAAAAGTCCACAAGTTGTGTCCAGGGCTTGTTGCGTGCCCACTGAACTAGATCCCATCTCCCTGCTCTACCTAGATGACGCAGGTGTGGTCACGTATCAGTATAAATTTGAAGGAATGGTAGTGGCCAAGTGTGGATGCAGATAG

Function

symbol description
bmp10 Predicted to enable cytokine activity. Acts upstream of or within artery development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver and pericardial region. Used to study hereditary hemorrhagic telangiectasia. Orthologous to human BMP10 (bone morphogenetic protein 10).

GO:

id name namespace
GO:0060395 SMAD protein signal transduction biological_process
GO:0060840 artery development biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04052 Cytokines and growth factors

ZFIN:

id description
ZDB-GENE-060526-211 Predicted to enable cytokine activity. Acts upstream of or within artery development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in liver and pericardial region. Used to study hereditary hemorrhagic telangiectasia. Orthologous to human BMP10 (bone morphogenetic protein 10).

Ensembl:

ensembl_id ENSDARG00000061769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058723 True 1458 mRNA 0.50 2 21211135 21214299

Neighbor

gene id symbol gene type direction distance location
XLOC_030002 arhgap25 coding upstream 7066 21181047 ~ 21204069 (+)
XLOC_030001 cds2 coding upstream 38936 21144269 ~ 21172199 (+)
XLOC_030000 hs3st1l2 coding upstream 70045 21100356 ~ 21141090 (+)
XLOC_029999 si:dkey-174n20.1 coding upstream 282937 20922100 ~ 20928198 (+)
XLOC_029998 limk2 coding upstream 347761 20823409 ~ 20863374 (+)
XLOC_030004 si:dkey-13n15.11 coding downstream 10718 21225017 ~ 21249761 (+)
XLOC_030005 BX470224.3 coding downstream 43919 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 coding downstream 56151 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 coding downstream 59866 21274165 ~ 21278501 (+)
XLOC_030008 NA coding downstream 70743 21285042 ~ 21285547 (+)
XLOC_029996 BX510312.1 non-coding upstream 536085 20674933 ~ 20675050 (+)
XLOC_029992 NA non-coding upstream 664646 20542900 ~ 20546489 (+)
XLOC_029982 BX547941.1 non-coding upstream 1133325 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 1245852 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1805197 19404532 ~ 19405938 (+)
XLOC_030013 NA non-coding downstream 793480 22007779 ~ 22008067 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00585149_00589325 BMP10 coding CI01000339 null 584959 ~ 590077 (+)