RNA id: TCONS_00058724


Basic Information

Item Value
RNA id TCONS_00058724
length 4005
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_030004
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21225017 ~ 21249761 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTAGTTATGTGTCTTTAAAGAGTGACAGATCAATGGCTGAACCACCTAAATTCAGTGACGAAGCGAAACATTTTCCACTCAGTCATTCAGAGAAAGAGGAGCAGAAATGTGCTGTTCACTACCAGTTCCAGGGTGCAGCATCATCTCTACCAAGCAATGTGTCTTTAAAGAGTGACAGATCAATGGCTGAACCTCCTAAATTTAGTCATGTAGCTCAACATTTGCAGTCCAGtctttcagaAAAAGTAGAAGTCTGTGCTGTTCACCATCGGAGACTGTCATCTACAATATCAAGCTATGTGTCTTTAAAGAGTGACAGGTCTATGGCTGAACCTCCTCGATTCAGTGATGCATCAGAACAATTTAAATATGGccACAGGGTAGTTCAAGATCAGCCTGAGTGCCCACAGCCAGGGTCCAGTTCTGCTGGAGAGCAGCTCAACATTTTCCAATCAGTAGATGAAATCTCTCAGCGTATCAAAGAGCATCACAAAACCAGCATAAAGCAGAAGTATGAGAGTTTATGCGAAGGATTcaacaaacaagaaaacaaaacccTCCTGAATAAGATTTACACACAGCTTTATATaatagagggagagagagaaggggtgaatgaagaacatgaggttgtGCAAATTGAAAAGGCCAAGACTGAACGCTTACAAGGCACTCCAATTAACTGCAATGACATTTTTCAGCCCGTACATGATCCATGTTATGGAAGAAGTGATGAGAAAGACAAAGTGAGGACTGTTCTCACCAAAGGAATTGCTGGAATTggaaaaaccgtctctgtgcagaagttcattctggatTGGGCTGAGGGAAAAGCAAATCAGGATGTCGATTTTCTCTTTGTTCTTCCATTTCGGGAACTTAACTTAGTTAAAGATGACCAATACAGTCTTCACAAACTTCTGCTTGACTTTCATCCAGAACTTTTGGAGATAAACACTAGGATTTATGATTTATGTAAAGTCTTGTTtgtctttgatggtctggatgaaagtaGAATTACCCTGACATTTTCACACTGTGAGAAGATTTCTGATGTGTCCACAAGCTCATCTGTGAGCATGTTGTTGTCAAATCTCATCAAGGGGGAGTTGCtgccctctgctctcatctggatcacatcCAGACCCGCAGCAGCCAGCCATATCCCCTCACATTACATCAGCCGTGTGACAGAAGTGCAAGGATTCAGTGACCCTCaaaaggaggaatatttcaggaagaggaTCAGCAACCAGGATCaggccagcagaatcatctcacaCATTAGAGCAGCAAGAAGCCTTCACATAATGTGCCATATACCGGTCTTCTGCTGTATCACAGCCACTGTGCTTCAGAACATCCTGGAACAGGATCTCAGTGCAGAAATCCCTAAAACATTAACAGAGATGTACATACATTTTCTGATCATCCAGACGGATGTGAAGAGGCAGAAGTTTGATCAGAATGTCGAGGGAATTGAGAAAGATCTAAAATTGCTGCTGGAGGCAAGCAGAGATTTGATATTGAAACTTGCTGAACTGGCTTTCAAAGGTCTGATGAATGGTCATGTCCTGTTTTATGATGAGGACCTGAAAGCGTGTGGCATAGATGTCAATGAGGCCTGTGTGCACTCCGGGTTTTGCACTGAGTTCTTTGATGAGGAATCTGTGATCAAGTCAAGGAAGGTCTACTGCTTTGTTCATTTGAGCTTTCAAGAGTTTTTTGCAGCACTTTTTGTGTTTTCCAGCTATCTGAACAAGAGCAGTGATGTCCTGAAGATATTCCAAAAGAAGAAAGGGAGAAGAAAGGTCAAACTGCAGTCTGATGAGGTTTCGCTGGATGTGTTTCTGAATGGTGTGGTGGATGAAGCACTGAAGAGTGATAATGGACATCTGGATCTTTTCCTTAGATTTCTTCATGGCCTCTTGCTGGAGTCAAATCAGAGACTTCTCCAAGGTCTGCTCACACACATGGAGGACGACCCTGAAAGCATGACAAAAGCGATGAAAAACCTCAAACAGAGTCAAAAGCAGAATGTTAGACCAGAAAGGTGGATTAATCTGTCACACTGCCTAATTGAAATGAAGGACACTTCTGTTTCTGAGGATATTCAGGCGTACCttaaaaatgaaggaaaaagaaaaatatatttgtctTCCCCCCACTGTTCAGCGCTGGCTAACATGCTTCTGATGGCAGAGGATGTGCTGGAAGAGCTAGACCTCAAGAAATACAACACAACATCCATGCAGGCTCTGAGGAGACTGATACCAGCTGTGAGGAACTGCAGAAAGGCAATATTGGTAGGCTGTAATCTCACTGAACAATCATGTGAAACTGTGGCATCGGCTCTGCAGCCAGCCAACTCCCCAGTGAGAGAGCTGGAcatgagtaacaatgacctgcaggactCGGGTGTAAAACTCATTTCTGTTGGACTCAAGAGttcacactgtaaactggagatacTGAGATTGAAATGTTGTAAACTCACCATGCAGTGCTGTGAAACGGTGGCTTCAGCTCTGCTGTCAGCAAATTCAcgcctgagagagctggacctcaGTTACAATGagctgcaggattcaggagtagAGTGGCTCGCTGCTGGACTAAAAAGCccacactgtaaactggagatatTGAGTTTGTCTGGCTGTAAACTCACTAGTCAGTCCTGTGAAGTGCTGGCCTCAGTTTTACAGTCAGAGGGCTCCCGACTCGGACAGCTGGATCTGAATAataatgacctgcaggattcaggactGGAGTTGCTCTCTGCTGGACTGAAAATCTGTAAACTGGAAAAACTAAGgTTGGCCACCTGTAATCTCACTAGTCAGTCCTGTAAAACGATGGCCGCTAGTCTTCAGTCAGTAAACTGTGTCCTGAAAGAGCTGGatctgagtaacaatgacctgcaggattcaggagtagAGATTCTGTCAGCTGGACTAAAGAGCccacactgtaaactggagatacTGAGATTGTCCATTTGTAATCTCTCTGATCGGTCGTGTGCAACAGTGGCTTCAGTTTTACAGTCAGCAAATTGTTTGAGAGAGCTGAACTTGAGCAaaaatgacctgcaggattcaggagtgaagatgCTCTCAGATGGACTGAAGAGTTCATTATGTGTACTGGAGATACTGAGAATGTCTGGCTGTTTTATCACAGAGGACGGCTGTTCAGTGCTGGCTTCAGTTCTGAATTCAAAACCTACACATCTAAGAGAGCTGGACCTCAGCTGTAATCATCCAGGAGACTTGGGTGTTCAGCTACTCACGGCTAGACTGAATGATCAAACCTGTAAATTGGAGATACTCAAtTTGGAACATGAGGGCAAGTTTAGGATCGCAGCTGGTTTACGAAGATATGCTTGTGACCTCACCCTGGACCCcgatacagcacacacacatctgtctCTATCTGATGGAAACAGAACGGTGACGCATGTAGCAGAGGAACAGTCCTATCCCGATCATCCTGACAGGTTTGAGTGCTGTCCTCAGGTTCTGTGTGCTGAGAGTCTGCGTGGACGCTGCTCATGGGAGGCTGAGTGGAGCGGGAAAAGCGGAGTCTACATTTCAGCCTCATATAAAGGCATCAGAAGGAAAGGACAGAGCGATGATTGTGAGTTTGGATCTAATGACAAATCCTGGAGACTTGTCTGCTCTGATAACAGCTTTTTAGCCTGGCACAATAATGAGAGAACTAAAATGCGTCCGCCTTCATCCTCATCTCGCTCTAAAAGGGTCGGGGTGTATTTGGACTGGCCAGCTGGCACTTTGTCCTTCTACAGCATCTCTGACAAAAATAAactcacacacttgcacacatttTCCTCCACATTCTCAGAGCCTCTGTATGCAGGGTTTGGCCTTTATTCAGGAACCTCAGTGTCTCTGTGTCCTATAGAAACACAAAAAACTGTGGCAATGACATAAATACATTGTAAGATAGCAAGCACTTGGTTTACTTTTAGAAATTTTTA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-295 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000141573

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058718 lncRNA upstream 379594 20843977 ~ 20845423 (+) True XLOC_029998
TCONS_00061682 lncRNA upstream 678528 20542900 ~ 20546489 (+) False XLOC_029992
TCONS_00058709 lncRNA upstream 678528 20542992 ~ 20546489 (+) False XLOC_029992
TCONS_00061428 lncRNA upstream 679066 20544696 ~ 20545951 (+) True XLOC_029992
TCONS_00061681 lncRNA upstream 1259734 19961795 ~ 19965283 (+) True XLOC_029980
TCONS_00061429 lncRNA downstream 35281 21285042 ~ 21285547 (+) True XLOC_030008
TCONS_00061430 lncRNA downstream 758018 22007779 ~ 22008067 (+) True XLOC_030013
TCONS_00061431 lncRNA downstream 835776 22085537 ~ 22094364 (+) True XLOC_030015
TCONS_00061683 lncRNA downstream 981453 22231214 ~ 22234694 (+) True XLOC_030019
TCONS_00061432 lncRNA downstream 1146713 22396474 ~ 22404667 (+) True XLOC_030023
TCONS_00058723 mRNA upstream 10718 21211135 ~ 21214299 (+) True XLOC_030003
TCONS_00058722 mRNA upstream 20948 21181047 ~ 21204069 (+) True XLOC_030002
TCONS_00058721 mRNA upstream 52818 21144269 ~ 21172199 (+) True XLOC_030001
TCONS_00058720 mRNA upstream 83927 21100356 ~ 21141090 (+) True XLOC_030000
TCONS_00058719 mRNA upstream 296819 20922100 ~ 20928198 (+) True XLOC_029999
TCONS_00058728 mRNA downstream 38466 21288227 ~ 21294105 (+) True XLOC_030009
TCONS_00058729 mRNA downstream 641544 21891305 ~ 21909082 (+) True XLOC_030010
TCONS_00058730 mRNA downstream 672773 21922534 ~ 21928196 (+) True XLOC_030011
TCONS_00058731 mRNA downstream 681363 21931124 ~ 21932191 (+) True XLOC_030012
TCONS_00058732 mRNA downstream 817809 22067570 ~ 22070229 (+) True XLOC_030014
TCONS_00058714 other upstream 549967 20674933 ~ 20675050 (+) True XLOC_029996
TCONS_00058694 other upstream 1147207 20077694 ~ 20077810 (+) True XLOC_029982
TCONS_00058672 other upstream 2090107 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058656 other upstream 4195603 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058647 other upstream 5481764 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058725 other downstream 8457 21258218 ~ 21259238 (+) True XLOC_030005
TCONS_00058726 other downstream 20689 21270450 ~ 21271359 (+) True XLOC_030006
TCONS_00058727 other downstream 24404 21274165 ~ 21278501 (+) True XLOC_030007
TCONS_00058738 other downstream 1069088 22318849 ~ 22327098 (+) True XLOC_030021
TCONS_00058753 other downstream 1721051 22970812 ~ 22972320 (+) True XLOC_030034

Expression Profile

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