RNA id: TCONS_00058721


Basic Information

Item Value
RNA id TCONS_00058721
length 2822
RNA type mRNA
GC content 0.42
exon number 13
gene id XLOC_030001
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 21144269 ~ 21172199 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGTCTCGATCTCCCTTTCCCGTCCCAATAACAATCATTGAAAACGAACAGCAACCCCCCAAAGATTGCTTCTTCGCCAGGCCTCTATTTTCACCAAACCGAGCCCACCATGACAGAATTACGACAGCGAGGAGCGACGGATAAAGAGCTGAAGCATCAACACTCGGAGGATAAGGGCTCTGAGACAGAGGGCAAGGAGAGAGATGGAGCTTCAGACAGTGAGACGAAACCAGAGGTTCCTGTTTCTGCCGATGACACACCGGAGGTTCTCAATAAAGCCCTCTCAGGCCTTTCTTCACGATGGAAGAACTGGTGGGTGAGGGGCATCCTGACTCTAGCCATGATCTCcttcttctttttcattatttatctGGGGCCGATGGTGCTGATGATGATTGTGCTGTGCGTTCAGATCAAGTGTTTCCAGGAGATCATCACAATTGGTTACAGTGTGTATCACTCCTACGACCTGCCCTGGTTCAGAACACTAAGCTGGTACTTCCTGTTGTGTGTGAACTACTTCTTCTATGGGGAAACAGTGACAGATTATTTCTTCACTCTGGTGCAGCGGGAGGAGCCTCTTCGAATCCTCAGCAAATACCATCGCTTCATTTCATTTGCCCTGTACCTCACAGGGTTCTGCATGTTTGTTCTGAGCCTGGTGAAGAAACACTATCGCCTACAGTTTTACATGTTCGGCTGGACTCATGTGACCCTGCTGATCGTAGTGACTCAGTCCCACTTAATCATTCATAACCTATTCGAGGGAATGATTTGGTTTATCGTGCCCATATCCTGCGTTATCTGTAATGACATCATGGCTTACATGTTTGGCTTCTTTTTCGGTCGCACCCCACTCATCAAGTTGTCTCCTAAGAAAACATGGGAAGGGTTTATCGGTGGCTTCTTCTCCACTATTGTTTTTGGAATTTTACTGTCCTATGTGATGGCAGGTTACAGCTACTTTGTGTGTCCGGTAGAGTTCAACAACGACTCCAACAGATTTACAGTGGACTGTCAGCCATCTGAGCTCTTCCAGCTTCAAGACTACAGCCTGCCATCTGTACTTCAGTCCATCACTGGCTGGACCACAGTGAAGCTGTACCCATTCCAGATCCACAGCATCGCCTTGTCTAGTTTTGCCTCCATCATGGGACCGTTTGGAGGCTTTTTCGCTAGTGGCTTCAAAAGGGCCTTCAAAATCAAGGACTTTGCAAACACCATTCCAGGTCATGGAGGGATCATGGACCGCTTTGACTGTCAGTATCTCATGGCCACATTCGTAAATGTTTATATTGCCAGCTTCATCAGAGGGCCAAACCCTTCAAAAGTCATCCAGCAGCTTCTTGCTCTGAGACCAGACCAACAGCTCCACATCTTCAACTCGCTCAAGGCTCATCTGACAGAGAAAGGCCTGCTTCCTGCCCTGGAAGAAGCAGCCTAACTTCTGGGACCACCAGGGACATCCCACCGTAGACAGAGAGAGGAGAGTTAAGCAGATCCAGGCATGTATGCAAGTGGGAGATGAGGAACAAAAGAAGGGAAACAACGGAAAACTGAACTATAAACCTTGGGTCATTCCATTTTCTGTGTGGGtgggtgcgtgtgtgtttgtgcgcgcgcgcgcgtgcgtgtgtgtgtgtgcgtgcgtgtatgtgcaaatcagtgtttttgcttcttattttatttttttgtgaactttTTATGTTTATCTCTTATGCCACAaaagaatattatatatattgagATGCCATTGTTGTTACAGTTCTTTGTTAGTTGAGCTGTATATTTCCACTTGTGTACAAATGTTCTGTACCTATAGATTGTCTGCATATTTTATAgtgtttattatgttttacatTGATTTTAATTCACTGCTCATCACACTGTCATTTCAAACTCAGGCTAGCCTTTATTTTTTGATGAACAGAGTATCTATACCCAGTTAAAGTTCCGTGAAGGATTGCAATTCCAATGCAGTGTCATAAATTCATGTTGTTTTCCCAAGAGGAATATGGTTATCAAACATGTTTCCGCTCAGTAGGTGGTGATGGTTACAGTTCAGCTGTGTGAGACTGTACATATACTGCTCCTCCTGAAGATAAAGATTCCATTATTTTGTGTTTAGGAGGAAGTTCAGGCCTTGTCAGACAACAGTTATGAAGCCCTGTCTTTGTTTTCGTAAGCCAAATTAATGAGATATAACTTTTATTGTAACTGTTACGCATAGTTAAATAATTTGTTGTTACTCAGCACTGAAAAGAAATGTGAAATGTCGACAAAAATTTCACACTGAATGTTACATTTCAGAAATTGTTTAAGCTCTAAAacaaaattgtattgtttttagttttattgtaatttaagcCGAACACTTCTTATTTAAGATCTTtctttgtttctgtgtttgtgaaCTGTTACAAGCTAGTTGGTAAAATCAGGTTGCGCATTGCTTGGGTTTTGGTTTTCATGCTCATTTCGTATGACAATGTCTTTGGTACCATTTTCACTGCATGAGACCAAGTCTTCCTCATATTTTATGGCCCATCTGTTGAATTCTTAGCATCAGCTAAAAAAACTCAATCCAAAACGAGTGTCTATTTTGTGATTTGCTTAAGGTATTTTATTCTCTTTTAATACGTTAGTCATTGACATGTGCCATACACCATATTTCATGAAAAAACTGAGTGTCATCGAGCAGCTTTAATATAGTAGTGCATAAACAGTCAAGTGTTTGAGGTTGTAATTGGCTCAGTTTAGTCTGTAAGCCACAGTCTATGTACAGTCCACTGCCATACATCAATAAAGATCCatgagcaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:1900748 positive regulation of vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016024 CDP-diacylglycerol biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0004605 phosphatidate cytidylyltransferase activity molecular_function

KEGG:

id description
ko00564 Glycerophospholipid metabolism
ko04070 Phosphatidylinositol signaling system

ZFIN:

id description
ZDB-GENE-030717-4 Predicted to enable phosphatidate cytidylyltransferase activity. Acts upstream of or within angiogenesis; positive regulation of ERK1 and ERK2 cascade; and positive regulation of vascular endothelial growth factor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in trunk vasculature. Orthologous to human CDS2 (CDP-diacylglycerol synthase 2).

Ensembl:

ensembl_id ENSDART00000028087

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058718 lncRNA upstream 298846 20843977 ~ 20845423 (+) True XLOC_029998
TCONS_00061682 lncRNA upstream 597780 20542900 ~ 20546489 (+) False XLOC_029992
TCONS_00058709 lncRNA upstream 597780 20542992 ~ 20546489 (+) False XLOC_029992
TCONS_00061428 lncRNA upstream 598318 20544696 ~ 20545951 (+) True XLOC_029992
TCONS_00061681 lncRNA upstream 1178986 19961795 ~ 19965283 (+) True XLOC_029980
TCONS_00061429 lncRNA downstream 112843 21285042 ~ 21285547 (+) True XLOC_030008
TCONS_00061430 lncRNA downstream 835580 22007779 ~ 22008067 (+) True XLOC_030013
TCONS_00061431 lncRNA downstream 913338 22085537 ~ 22094364 (+) True XLOC_030015
TCONS_00061683 lncRNA downstream 1059015 22231214 ~ 22234694 (+) True XLOC_030019
TCONS_00061432 lncRNA downstream 1224275 22396474 ~ 22404667 (+) True XLOC_030023
TCONS_00058720 mRNA upstream 3179 21100356 ~ 21141090 (+) True XLOC_030000
TCONS_00058719 mRNA upstream 216071 20922100 ~ 20928198 (+) True XLOC_029999
TCONS_00058716 mRNA upstream 280895 20823409 ~ 20863374 (+) False XLOC_029998
TCONS_00058717 mRNA upstream 298282 20823463 ~ 20845987 (+) False XLOC_029998
TCONS_00058715 mRNA upstream 448366 20693724 ~ 20695903 (+) True XLOC_029997
TCONS_00058722 mRNA downstream 8848 21181047 ~ 21204069 (+) True XLOC_030002
TCONS_00058723 mRNA downstream 38936 21211135 ~ 21214299 (+) True XLOC_030003
TCONS_00058724 mRNA downstream 52818 21225017 ~ 21249761 (+) True XLOC_030004
TCONS_00058728 mRNA downstream 116028 21288227 ~ 21294105 (+) True XLOC_030009
TCONS_00058729 mRNA downstream 719106 21891305 ~ 21909082 (+) True XLOC_030010
TCONS_00058714 other upstream 469219 20674933 ~ 20675050 (+) True XLOC_029996
TCONS_00058694 other upstream 1066459 20077694 ~ 20077810 (+) True XLOC_029982
TCONS_00058672 other upstream 2009359 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058656 other upstream 4114855 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058647 other upstream 5401016 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058725 other downstream 86019 21258218 ~ 21259238 (+) True XLOC_030005
TCONS_00058726 other downstream 98251 21270450 ~ 21271359 (+) True XLOC_030006
TCONS_00058727 other downstream 101966 21274165 ~ 21278501 (+) True XLOC_030007
TCONS_00058738 other downstream 1146650 22318849 ~ 22327098 (+) True XLOC_030021
TCONS_00058753 other downstream 1798613 22970812 ~ 22972320 (+) True XLOC_030034

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_00541568_00553834.mRNA True 1564 mRNA 0.48 13 CI01000339 541568 ~ 553932 (+)