XLOC_003004


Basic Information

Item Value
gene id XLOC_003004
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40489637 ~ 40490637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005520
CACTCATGGCCTATGAGACAGAGGATCAGGAGACTCAATACTGCTTTCCTGACATCAACTCATCATGTGTTAAAGGACGACACTCAAGTCATGGATATATTGCATATTTGCTTGTGTCATTGCTGTCAGCATGGACTGTGTTTCTGAATCTGCtggtgatcatctccatctctcacttcaaGAAGCTTCACACTCCAACCAACATGATTATTCTCTCTCTGGCTGTAAATGATCTGTTTATTGGACTCATCATGCCTATAGAGGCAGTCAGACTGATTGAGACGTGTTGGTACTTTGGAGACACTTTCTGTAACctctatttaatttttattgtaatactTCTCTCAGCATCTCttagtaatttagttttaattgctGTTGATCGTTATGTGGCTGTGTGTCACCCTCTACTGTACCCACAGAAAATAACCATCACTAAAACATTTATGTGTATCTGTATGTGCTGGGTTTGCTTTTCAGCTTACTGCACTGCCCTTGTAATCAATAATAGTTATTTTGACCCTTCACACAGAACAGGTGTGTGTTATGGACAGTGTTTAGTCCTGATGAGTTTTAGTTGGACAGTCACTGATCTGTTTGTGGGTTTTATTTTCCCTTGTGCGctgataataacattatatttgaGGATTTTCTATGTCGTTCATCTGCAAGTGAAGGTTATAAACTCTCTGATGAAGGGTGGTAAAAGTGTAACTGAGAATTTGTTAAAGAGGAAGTCTGAGAGTAAAGCTGCTCTGACTTTAGGATTCATTGTGACTGTTTATCTGCTTTGCTGGATTCCTTTCTATATCTGTTCTCTTACTGTATACTCTTCCACAGCTATGAATGTTTTAATATGGGCTGTACATTCTAACTCAGGTCTGAATCCTCtggtttatgctttattttacccCTGGTTTAAAAAGACAGGGAAACTCATTTtaactctgaaaatatttcagccGGCATCCTCTTTTATAGTTGTGCACAACATTAATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005520 True 1001 lncRNA 0.38 1 40489637 40490637

Neighbor

gene id symbol gene type direction distance location
XLOC_003002 taar20z coding downstream 4997 40472282 ~ 40484640 (-)
XLOC_003003 taar20d1 coding downstream 9726 40478928 ~ 40479911 (-)
XLOC_003001 si:dkey-181m19.11 coding downstream 17742 40471629 ~ 40471895 (-)
XLOC_003000 BX530037.2 coding downstream 20243 40468372 ~ 40469394 (-)
XLOC_002999 taar20b1 coding downstream 26743 40461869 ~ 40462894 (-)
XLOC_003005 NA coding upstream 7522 40498159 ~ 40499209 (-)
XLOC_003006 si:dkey-181m19.17 coding upstream 11733 40502370 ~ 40503416 (-)
XLOC_003007 taar20b1 coding upstream 16892 40507529 ~ 40508557 (-)
XLOC_003008 taar19k coding upstream 22975 40513612 ~ 40514643 (-)
XLOC_003009 BX530037.3 coding upstream 26112 40516749 ~ 40517598 (-)
XLOC_002993 BX530037.4 non-coding downstream 70578 40418807 ~ 40419059 (-)
XLOC_002989 AL953903.3 non-coding downstream 85306 40403994 ~ 40404331 (-)
XLOC_002985 AL953903.1 non-coding downstream 105205 40383782 ~ 40384432 (-)
XLOC_002983 AL953903.2 non-coding downstream 113641 40375010 ~ 40375996 (-)
XLOC_003010 CR396590.6 non-coding upstream 30186 40520823 ~ 40521100 (-)
XLOC_003015 CR396590.4 non-coding upstream 46803 40537440 ~ 40538047 (-)
XLOC_003023 NA non-coding upstream 130344 40620981 ~ 40621955 (-)

Expression


Co-expression Network