XLOC_030183 (camkk1a)


Basic Information

Item Value
gene id XLOC_030183
gene name camkk1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31283576 ~ 31432727 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059017
AAATGTTTGATGGATCGTGAAGTTCATCCAAGCTTTCTGTTGGCGTGGTATCATTGCACATGCTAAGAGACGCTATTTAACTTCACACTGGCTAATTCTCCAGATGAAAATGCAGCGTGTCTCGTGAATGAAAGCCGATGACCGAGTGCAGGTGACGGGCTGTAATGTTTGAAGCTGCGCTCCCTCGCTCCGTAGCTCGGTCGGTCAGTCGGGGATCTGTCAGCAGTGCggaagagagagagtgagagagagggaTGGGGCAGATATATGCCATTAAACTGACTCACAAGAGACTGAAATGATGCAGAGATTCCGCCACGAAATAAAGCCCGAGCATCACTGAAGATAACCAGACAGAGAAAGACGCGTGCTCGGATGGAGCTGTGAGCAGTAGCAGCAGCGGTGGTGACATTGATGAAGCCCGCTGTCACTCATCCGACGCACGCAGAGGAGCATCTGTGACAGCGCGATTTTGGAAGTGAAACTTTTTAACAGACAGATTGATCCGAGCGTCGTCTGCTCGAGCCAAAATCGAAAGCAACTTCACAAATTGCAGACGCTGCGATCGGGAGCTTGTTGAACAAAAGACACGCGACCAAGTTGACAGGTCCCTTTCTGCTTTAGAGAGACTAGTGGAGGAAGCGTTGAATGCTGCAAGACTGAGCTTTCTTTAACTGCAAACCAGCTCTGGAGGTGGAACAATTAATGAGAAGCCCTCGTCCTGTATGGTGATGGCGATGAGCAGTGGTCCTGGTGGCGTGAGGGTGGAGCGTGACCCAGACTCCTCCCAGACTGCTGAGATGACAGACAGGATGTCCGTCATGTCCCTGGGGCCCGACAGCTCTTCCAGTGTGCTGAAGAACGGGATGGGTGTCAAGAAAGCTCAACCCAAGAGGCCACACCTGTCTGGCAGGAAAATGTCACTTCAGGAGAGAGGCACGTACATGTCCTCTCGAATAGCCAGACAGCCGACCATCGAATCCAAACGAGTGTCCATCTCAGACTCACAGGACTGCATCCAGCTTAATCAGTACAAGTTAAAGAGTGAGATTGGGAAGGGCTCATATGGTGTTGTCAAGTTGGCATACAATGAAGATGATGACAAATATTACGCAATGAAAGTTGTATCTAAGAAGAAGCTGATGAAGCAGTATGGATTTCCCAGACGTCCTCCTCCCAGAGGTCCTAAAGCTGCCCAGGGGGAGCAGCCTAAAGTGCTCGGTCCTCTGGAGAGAGTTTACCAGGAGATTGCAATCCTGAAAAAACTGGACCATCTGAACATAGTTAAACTTGTTGAGGTACTGGATGACCCAGCAGAGGACAACCTTCATATGgTGTTTGAGCTGATGCAGAAAGGGCCTGTAATGGAGGTTCCAAGCGACAGTCCCTTCTCCGAGGACCAGGCCCGCCATTACTTCAGAGACATTGTCCTGGGCATCGAGTACTTGCACTATCAGAAGATCGTTCACAGGGATATCAAACCATCAAATTTATTGCTTGGAGATGACGGCCATGTCAAGATTGCTGATTTTGGGGTCAGTAACCAGTTTGAGGGGAACGATGCCTTGCTCTCCAGCACTGCAGGGACTCCTGCATTCATGGCTCCAGAGACGCTGTCAGACAACCGGCAGAGCTTCAGTGGAAAGGCTCTGGACGTGTGGGCAATGGGAGTGACCCTCTACTGTTTCGTCTATGGGAAGTGCCCATTTATTGATGAGTACATACTGGCTCTTCACAATAAGATCAAGAGTAAAGTGGTGGAGTTCCCCGACACACCGACTGTCAGCGAGGGGCTGAAGAGCCTGGTCTCACGAATGCTGGACAAAAACCCAGACACCAGGATCACCATTCCTGAGATCAAAgttgaCCCGTGGGTGACTCAGGATGGCAAAGACCCTTTACCTTTAGAAGAAGAGCACTGTACTGTGGTGGAGGTCACTGAAGAGGAGGTGCAGAACTCTGTCAAGTTTGTCCCCAGTCTGTCTGCTGTGatACTAGTCAAAGCCATGTTAAGGAAGCGTTCCTTTGGGAATCCATTTGAGTGTCCCAGTAGGAGAGAAGAGAGATCCATGTCTGCACCCGGCAGTTTGCTCATAAAGGGGAGCAGCGGAGAAGCTCCTAGAGAAGCCGAGCTAGAGGACTTGCATGAGGATGAACCACCCTCCTCTTGAGTGTCTCCAAAGAACCCGAAGCGTTTCTCATTGTCTGCGCTTTCAGACACCTCCAGCCCTTCCAGCAGATGATGATCATGACCCAAACCGCTCGACTACTCTGCGTTTCTGTCAGCTCGAGGCTTATCTTGACATTGAACTGGATACTGCTGTCGCTTTCATCCTTGAGGCTTTTCACTTTCGTCAGCCTTGCACAAGAATCCTTTTCCTCGCTTTTTAAGTCCCTCCATCATGGTTCTGGTGAAACTTTATCTTCACATATCTTGGATGTTCCACCTTTGTCCTCACATCCTGGTTAACAAGTAGACTTCAGAAAAAAACTACATTGAAGCACAGTTGTCGGAAATAGACTACTACTTACTAAAGCAAAAGACTACAGCATGGATAAAAACTGCTGATAATAACTGATATCATGATATGCGGTGATGGCGTGGTGCAGTGTGCTGCCATCATAACATctgtaaatgtgtataaaattATAGATATagtgttttgcctttttgtacGTGTTCATGTGcaattcttaaagggatagttcaccagaaATGAGCATTTACTAagcatttactcactttttacctGTTTTAAGCTCTTTATGAGTGTCTTCTGTTAAAAGCAAAAGAAAGTAGGCTATTTTtaagaaaactaaaaacctgtaaccattgacttacatagtagtaAAActaattctatggaagtcaatggttaccggtttccagctttcttcttcttttacatttaatgataaaaaaagaaactcataaaggttaaaaacacttaaacaatatataaatgatgacagaaattaaatttttgtgtgaactatccctttaaccctcTCTATCATAGCATGGCCTTTCACATATTGTGGTGTTTTCATATCTCAATTTTCTCATTTCATTCAGATTCAGTATATAAACACTCACACAGTGCTGTGCTGTGGATCAAAAGGGGCTTATGTAACTACTAGACACTAAAAAGGCTCTCGATGTCTGCACATTCAGTGATTTCCAAAAAACGGGGCTTTTATCTAGAAA
>TCONS_00059018
AGCTCTTCCAGTGTGCTGAAGAACGGGATGGGTGTCAAGAAAGCTCAACCCAAGAGGCCACACCTGTCTGGCAGGAAAATGTCACTTCAGGAGAGAGGCACGTACATGTCCTCTCGAATAGCCAGACAGCCGACCATCGAATCCAAACGAGTGTCCATCTCAGACTCACAGGACTGCATCCAGCTTAATCAGTACAAGTTAAAGAGTGAGATTGGGAAGGGCTCATATGGTGTTGTCAAGTTGGCATACAATGAAGATGATGACAAATATTACGCAATGAAAGTTGTATCTAAGAAGAAGCTGATGAAGCAGTATGGATTTCCCAGACGTCCTCCTCCCAGAGGTCCTAAAGCTGCCCAGGGGGAGCAGCCTAAAGTGCTCGGTCCTCTGGAGAGAGTTTACCAGGAGATTGCAATCCTGAAAAAACTGGACCATCTGAACATAGTTAAACTTGTTGAGGTACTGGATGACCCAGCAGAGGACAACCTTCATATGgTGTTTGAGCTGATGCAGAAAGGGCCTGTAATGGAGGTTCCAAGCGACAGTCCCTTCTCCGAGGACCAGGCCCGCCATTACTTCAGAGACATTGTCCTGGGCATCGAGTACTTGCACTATCAGAAGATCGTTCACAGGGATATCAAACCATCAAATTTATTGCTTGGAGATGACGGCCATGTCAAGATTGCTGATTTTGGGGTCAGTAACCAGTTTGAGGGGAACGATGCCTTGCTCTCCAGCACTGCAGGGACTCCTGCATTCATGGCTCCAGAGACGCTGTCAGACAACCGGCAGAGCTTCAGTGGAAAGGCTCTGGACGTGTGGGCAATGGGAGTGACCCTCTACTGTTTCGTCTATGGGAAGTGCCCATTTATTGATGAGTACATACTGGCTCTTCACAATAAGATCAAGAGTAAAGTGGTGGAGTTCCCCGACACACCGACTGTCAGCGAGGGGCTGAAGAGCCTGGTCTCACGAATGCTGGACAAAAACCCAGACACCAGGATCACCATTCCTGAGATCAAAgttgaCCCGTGGGTGACTCAGGATGGCAAAGACCCTTTACCTTTAGAAGAAGAGCACTGTACTGTGGTGGAGGTCACTGAAGAGGAGGTGCAGAACTCTGTCAAGTTTGTCCCCAGTCTGTCTGCTGTGatACTAGTCAAAGCCATGTTAAGGAAGCGTTCCTTTGGGAATCCATTTGAGTGTCCCAGTAGGAGAGAAGAGAGATCCATGTCTGCACCCGGCAGTTTGCTCATAAAGGGGAGCAGCGGAGAAGCTCCTAGAGAAGCCGAGCTAGAGGACTTGCATGAGGATGAACCACCCTCCTCTTGAGTGTCTCCAAAGAACCCGAAGCGTTTCTCATTGTCTGCGCTTTCAGACACCTCCAGCCCTTCCAGCAGATGATGATCATGACCCAAACCGCTCGACTACTCTGCGTTTCTGTCAGCTCGAGGCTTATCTTGACATTGAACTGGATACTGCTGTCGCTTTCATCCTTGAGGCTTTTCACTTTCGTCAGCCTTGCACAAGAATCCTTTTCCTCGCTTTTTAAGTCCCTCCATCATGGTTCTGGTGAAACTTTATCTTCACATATCTTGGATGTTCCACCTTTGTCCTCACATCCTGGTTAACAAGTAGACTTCAGAAAAAAACTACATTGAAGCACAGTTGTCGGAAATAGACTACTACTTACTAAAGCAAAAGACTACAGCATGGATAAAAACTGCTGATAATAACTGATATCATGATATGCGGTGATGGCGTGGTGCAGTGTGCTGCCATCATAACATctgtaaatgtgtataaaattATAGATATagtgttttgcctttttgtacGTGTTCATGTGcaattcttaaagggatagttcaccagaaATGAGCATTTACTAagcatttactcactttttacctGTTTTAAGCTCTTTATGAGTGTCTTCTGTTAAAAGCAAAAGAAAGTAGGCTATTTTtaagaaaactaaaaacctgtaaccattgacttacatagtagtaAAActaattctatggaagtcaatggttaccggtttccagctttcttcttcttttacatttaatgataaaaaaagaaactcataaaggttaaaaacacttaaacaatatataaatgatgacagaaattaaatttttgtgtgaactatccctttaaccctcTCTATCATAGCATGGCCTTTCACATATTGTGGTGTTTTCATATCTCAATTTTCTCATTTCATTCAGATTCAGTATATAAACACTCACACAGTGCTGTGCTGTGGATCAAAAGGGGCTTATGTAACTACTAGACACTAAAAAGGCTCTCGATGTCTGCACATTCAGTGATTTCCAAAAAACGGGGCTTTTATC

Function

symbol description
camkk1a Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMKK1 (calcium/calmodulin dependent protein kinase kinase 1).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-62 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CAMKK1 (calcium/calmodulin dependent protein kinase kinase 1).

Ensembl:

ensembl_id ENSDARG00000035452

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059017 False 3208 mRNA 0.46 17 31283576 31432727
TCONS_00059018 True 2363 mRNA 0.44 15 31350927 31432721

Neighbor

gene id symbol gene type direction distance location
XLOC_030182 atp2a3 coding upstream 14222 31168096 ~ 31269354 (+)
XLOC_030181 zzef1 coding upstream 173608 31036911 ~ 31109968 (+)
XLOC_030180 ankfy1 coding upstream 252736 30996322 ~ 31030840 (+)
XLOC_030179 ube2g1a coding upstream 288468 30986512 ~ 30995108 (+)
XLOC_030177 NA coding upstream 309497 30780430 ~ 30974079 (+)
XLOC_030184 si:dkey-220k22.1 coding downstream 47615 31480342 ~ 31591000 (+)
XLOC_030185 CR759893.1 coding downstream 115585 31548312 ~ 31548787 (+)
XLOC_030186 si:dkey-220k22.3 coding downstream 172595 31605322 ~ 31607709 (+)
XLOC_030187 slc25a25b coding downstream 347184 31779911 ~ 31806613 (+)
XLOC_030188 uap1l1 coding downstream 378935 31811662 ~ 31817395 (+)
XLOC_030178 NA non-coding upstream 329055 30952223 ~ 30954521 (+)
XLOC_030174 BX276103.2 non-coding upstream 555928 30723129 ~ 30727648 (+)
XLOC_030164 BX897688.1 non-coding upstream 1117004 30166456 ~ 30166572 (+)
XLOC_030162 dre-mir-125b-2 non-coding upstream 1284729 29998762 ~ 29998847 (+)
XLOC_030191 NA non-coding downstream 472120 31904847 ~ 31912078 (+)
XLOC_030192 NA non-coding downstream 478276 31911003 ~ 31918136 (+)
XLOC_030198 NA non-coding downstream 651002 32083729 ~ 32086577 (+)
XLOC_030204 NA non-coding downstream 827436 32260163 ~ 32264060 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_06430066_06464538 CAMKK1, CAMKK1A coding CI01000339 null 6429804 ~ 6464951 (+)
bowfin (Amia calva) AMCG00005606 NA coding CM030142.1 CM030142.1 5666860 ~ 5709455 (-)