XLOC_030209 (ier5l)


Basic Information

Item Value
gene id XLOC_030209
gene name ier5l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32791245 ~ 32793481 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059064
CAGAAACGACCGCGTTCAATGTTTCTCCACAGAGCTGACTTAAGCCTTCGTCCCCGAACGAAATATCGTGATTCTGACTAAAAGAAAGTTAGTTTCCTTCGTCGGAGAGGTGGGAAAGCATCAGCAGCCCGACCATGATCAACACCATGGAGTGTGCAGTGGATGCACAAAGTCTGATTTCGATATCTTTACGGAAAATCCACAACTCCCGTACGCAGAGAGGAGGAATCAAGCTGCACAAAAACCTGCTGGTCTCCTATGTGCTGAGGAACGCCAGGCAGGTCTACATGAACGAGAAGTACGCGGAGATCTACAGGATGCAGCAGTACGAGGAGGTGATGACGGTCTGCAACGAGATCCAGGAGCTGAACCCGCTGGATCTGGCGGAGGACTGTGAGGATCAGACGGCGGACTGCTGCGGCAGCGCGAGCGAGTCAGCGAGCCTCTGCGGCGCGCTCCTGCCCGCCGTCGGTCACCAGACTTCACCGGCGGCGCAGCACATACAGCCGGCCAGCGCCTGCTCGGTGCCCCTGGCTCTCCAAAGCGAGGAGGTGTGCAAAGCGGCGCCGGAGCCCTCGTTCTACCGCAGCTGCTGCGCGGAAGCCTACCCCGTGTCCAACTGTGACTTTTCGCCGGTAAACAACATGCACTGCAACAAAACTACAGTGCTCGACTTGGACACGCATGTCGTTACCACAGTAGAGAACGGGTATTTGCACCAGGACTGCTGCGCTTCGCTCCAACAGTGCTGCCAGGGCGCACAGAGCCCGGCCAAGAAACGCAAGCTTGACTTTGGTTACTACGTGTCCGAGATCGAGGAGGCACCGGATTTTACGCCGTGCAAAAGAGCGAAATTCGAGGACTCCTCATACGCGATCACGGAGCCCTTAGACACGTCGAACATTTCCAACCTCATCTCGATCTTCGGCTCGGGGTTTTCGGGACTGGTGAGCAGACAAGCGGACTTGGAGCAAGCCTTAAACGGACAGTTCTGTAGCAAACAAGCCCTGGCGAGTTTAGGGGCTTGGACGCGAGCTATTGTAGCCTTTTGACTCTGTGGTTAATGCGAATTCAGATACTTTATGAAATTGTACAAAGTCTAAGAcaaattgacttttatttttgCAGCAAAGTTATTTAAgcctttctgtttttatttttggtttgtttttggttTCGTTTCAGTGGGGGAGGCGGACAGTGGTTGTAGCCTACCACTTGTGATGTATCCTTTAAAACAAATGTCGATATTACAAACAAACGAAGTTGAATTTCGTTGCCTTAAACCCAACGCAGACTGCTAGCTATATGGCCACAAACATGGGAAGTCTCTGAATGTTTCGCTCGTGGATTGTTTCTTTTCTCTTTCTCCTCTTCCCCAGGAACTTTCGCAAAGATGTATTGTAAAAGAGCATTACTACTCACACGTAATGTTGGGAATAACGGGCTGCAAACGGGGAAGCCTACCCACTGCACGCTTATTTCTCAGTCTTTGGGCAGCCGTGTCATATTCTCTGACCAGTTTACCAGTAGAGCAGGCTACAGCAAGAGCTCGTGCTGTATGGAGCTCCAGGAAGAGCCCTGGCGCGCACAGACTACATTCTGTAATATCATATAAGGCAATCAAGTAGGCTAATGAAGGTGCAATATTTTGACCCCCCTCCCTGTCCGAGTTTGTTGTTTTCTGTATTCTCAAATGTGCTGTTGAAAGTGGAGAGGACTGGTGCGTTTTGTTGACTGCACTGACCTACAGCTCCAGTTCCTCTCGAGTGTGTTTGTAGTTCCTATGCCAGTCACCTCATCAACACTGAACGTTGGGGCCATTAATTAACACTACAACTCCCATAATGCACGCCGTGATTTAACCTGCCAGGTGTTTTTGTTGACTATCCAGTCTCCAGCGTTAACCATTTCCCGCCCCCTTGCtctcagaaaaagaaaaagtttaagcCTTCACAGTAATTCATGATGCCAGCATTTGCTTGGTTTTGTgggtttgattttattttctacAATCTTAGACCTTTTGTTCTAAAAAGGCAATCTCATAAATTAGCCATACGTCCTCACATTATATAAGCACTATGTGTATTGAATTAAAGACGTTTTCAGACGTATTCTCCATATTTTGTTGGTATTCTTGTATTTTTGTGCATATTAAATTGTATATCACCGGGTAAAACTGTTTTAGAAagtatttgtttaaaatttataaccttaataaaaaatcaaactta

Function

symbol description
ier5l Is expressed in several structures, including midbrain neural keel; myotome; pectoral fin; periderm; and retina. Orthologous to human IER5L (immediate early response 5 like).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5134 Is expressed in several structures, including midbrain neural keel; myotome; pectoral fin; periderm; and retina. Orthologous to human IER5L (immediate early response 5 like).

Ensembl:

ensembl_id ENSDARG00000054906

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059064 True 2237 mRNA 0.48 1 32791245 32793481

Neighbor

gene id symbol gene type direction distance location
XLOC_030208 CR376857.1 coding upstream 153480 32637648 ~ 32637765 (+)
XLOC_030207 ndor1 coding upstream 292509 32490238 ~ 32498736 (+)
XLOC_030206 NA coding upstream 423764 32358880 ~ 32367481 (+)
XLOC_030205 c9 coding upstream 435956 32345187 ~ 32355289 (+)
XLOC_030204 NA coding upstream 527185 32260163 ~ 32264060 (+)
XLOC_030210 crata coding downstream 22264 32815745 ~ 32859700 (+)
XLOC_030211 rpl12 coding downstream 89207 32882688 ~ 32887020 (+)
XLOC_030212 CR925757.1 coding downstream 91724 32885205 ~ 32885331 (+)
XLOC_030213 CR925757.2 coding downstream 92991 32886472 ~ 32886598 (+)
XLOC_030214 ccn1l1 coding downstream 120840 32914321 ~ 32920149 (+)
XLOC_030198 NA non-coding upstream 704668 32083729 ~ 32086577 (+)
XLOC_030192 NA non-coding upstream 873109 31911003 ~ 31918136 (+)
XLOC_030216 CR855258.1 non-coding downstream 200305 32993786 ~ 32993891 (+)
XLOC_030221 NA non-coding downstream 538968 33332449 ~ 33338469 (+)
XLOC_030228 NA non-coding downstream 1142138 33935619 ~ 33937420 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_07234668_07235576 IER5L coding CI01000339 null 7234476 ~ 7236787 (+)
striped catfish (Pangasianodon hypophthalmus) G384178 ier5l,LOC108228905 unknown NC_047621.1 CM018567.1 9765740 ~ 9768036 (+)
bowfin (Amia calva) AMCG00020164 ier5l,LOC107691035,LOC107723335,LOC107740934,LOC107693861 coding CM030127.1 CM030127.1 12206692 ~ 12207552 (-)