XLOC_030219 (med22)


Basic Information

Item Value
gene id XLOC_030219
gene name med22
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33287611 ~ 33294747 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059094
GACATTTGGGTAGTGACATCATCTGTACGCGACAGAACAAAAGCGGGAGGCTCGCGTTTACTTGAAGAAAGGTTATAAAATAATGCCTGCAGCTCATTGAGTAAAGAGTTACACAAGAGCTGAGATGTCCACACCGAGAGTCCTCCCGCAAAGCAAAGAGACTCTTTTGCAGAACTACAACAAGAGACTCAAAGATGACATCAGGTCAATTCTAGACAATTTTAcggaaataattaaaactgctaAGGTGGAAGATGAGACTCAGGTTTCCAGGGCGACGCAAGCTGAACAGGACCATTTTGAAATGCATGTCCGAGCTGCCAACATTgtACGTGCAGGAGAGTCTCTGATGAAGCTTGTCTCAGACCTGAAGCAGTTCCTTATCCTGAATGATTTCCCGTCTGTCAACGAGGCCATCAGTCTGCGTAACCAGCAGCTCCGCACACTGCAGGAGGAGTGCGACAAGAAGCTCATCTCTTTGCGGGATGAGATTGCCATCGACCTGTATGAGCTCGAGGAAGAGTATTACTCCTCCAGGTACAAATAGAGCAGTGATCCCAAACGTGTGTGCAGTCACCCCTGCCTTTACTTGCTTACCAGAGCCATAAACCTGATGTATATGTACATCATAAGAAAACATAACACAGGGTGATTCATGGAGCCATTCTTGTGTTTAAAGgtttttttaatttgcataacCAGTTACTGGCTTCAATCATTGAACATTGCTAACAATGCTAACATTGGGCTATTTGTTTGATCAAACCATGCAAGTTTGGTTTTCCATACACATGCATTTAATACCATTGTGTGCCTTAATTAGAGTGCAGATTCTTGCAGGTAAGCATTAAtgacataggaaaattaaggaAACTTGTAGTTAGACTTACAGTTTTGCTATAGTTTATATTTATAACAAGCAGGGTATCATTATATGTGTTTTTCTGCTATGCTCATAAAATAACATATGTATTTACATTGTATTAATTTCACACCAAAGACGTTATCAAGCACTTTCGGTATAACTGGGCAAGTATAACTGCACAAGAAATCTCTTATCCGTTATACAACTATAAGTGCATATAAAGATTCCATCCCAGGTGCCTTGTATGATTGTTTTAGAATATCTATTTTATATATCAATGTTGCAATCAGATATCAGGATGTTAATTTTCTGTTTATTAGTGGTGCTGAATAATTAAATGTTGATCTTATGTACTATACAAACATTTTAGATGAATTTAAGGAGTTTTTGAAACAAGGTGACCAGTAATAGTTTCAcaaaaagatatattttaattGAGGTATTATGggaattatttaataatacacaATTTTTTGGAAAATCA
>TCONS_00059095
TTATAAGTTTGAGCACCAGTATCTAATCAGTTCTTAGCTAATTAATTACGCTTGCGAGAATTGCTGTTTAACTAGTTTCAGTGTCCTAGACAAGCTACATTTAACGTACGCagaagaaaatgttttgttttgtgttttattttatttgaaagatGTTTCTCAAATGATACATTCTAGTTTCAAAGTTGCCAGCAGAATTACTCAGTTCAATATAATTACGCATGCAGATAAGAACGGGGTGTAAAGCTGTAGATCGCGAATCAACGTTAACGCATTGAGTAAAGAGTTACACAAGAGCTGAGATGTCCACACCGAGAGTCCTCCCGCAAAGCAAAGAGACTCTTTTGCAGAACTACAACAAGAGACTCAAAGATGACATCAGGTCAATTCTAGACAATTTTAcggaaataattaaaactgctaAGGTGGAAGATGAGACTCAGGTTTCCAGGGCGACGCAAGCTGAACAGGACCATTTTGAAATGCATGTCCGAGCTGCCAACATTgtACGTGCAGGAGAGTCTCTGATGAAGCTTGTCTCAGACCTGAAGCAGTTCCTTATCCTGAATGATTTCCCGTCTGTCAACGAGGCCATCAGTCTGCGTAACCAGCAGCTCCGCACACTGCAGGAGGAGTGCGACAAGAAGCTCATCTCTTTGCGGGATGAGATTGCCATCGACCTGTATGAGCTCGAGGAAGAGTATTACTCCTCCAGGTACAAATAGAGCAGTGATCCCAAACGTGTGTGCAGTCACCCCTGCCTTTACTTGCTTACCAGAGCCATAAACCTGATGTATATGTACATCATAAGAAAACATAACACAGGGTGATTCATGGAGCCATTCTTGTGTTTAAAGgtttttttaatttgcataacCAGTTACTGGCTTCAATCATTGAACATTGCTAACAATGCTAACATTGGGCTATTTGTTTGATCAAACCATGCAAGTTTGGTTTTCCATACACATGCATTTAATACCATTGTGTGCCTTAATTAGAGTGCAGATTCTTGCAGGTAAGCATTAAtgacataggaaaattaaggaAACTTGTAGTTAGACTTACAGTTTTGCTATAGTTTATATTTATAACAAGCAGGGTATCATTATATGTGTTTTTCTGCTATGCTCATAAAATAACATATGTATTTACATTGTATTAATTTCACACCAAAGACGTTATCAAGCACTTTCGGTATAACTGGGCAAGTATAACTGCACAAGAAATCTCTTATCCGTTATACAACTATAAGTGCATATAAAGATTCCATCCCAGGTGCCTTGTATGATTGTTTTAGAATATCTATTTTATATATCAATGTTGCAATCAGATATCAGGATGTTAATTTTCTGTTTATTAGTGGTGCTGAATAATTAAATGTTGATCTTATGTACTATACAAACATTTTAGATGAATTTAAGGAGTTTTTGAAACAAGGTGACCAGTAATAGTTTCAcaaaaagatatattttaattGAGGTATTATGggaattatttaataatacacaATTTTTTGGAAAATCATAgatgttaatgtttttaaaagtagttTGGCGCAATAAAGTTTTAACACAATGAGGACTAGCAAAATTCAGAgcactttaaaatatgtaataaagaGTAAAGGCTTCATTCAGACCATGTCGTAATTACCATGAATTCAAGATAACACGCATCTCTGGGGGCTGGGCACAGAAGCTATAGAGACCTATGTATTCATTCCTTATCTTACTAAAATTGTCTGACTCTTGAAGTCTATGGCAGCCTATAGCCATGTGGAAAATTTTGGACACGAatagagtttgggcacccctgctctagaattTCCAACAGCTCAGATTTACATTAATGTTTATGCTAATAACATTTAGCAAGAAGAACTAAAAActgaattttaacaaaaatggTTAATGACAAATATGCTGCCATGTTTTTAAACCTCTAAAATGTTTCTAGGCTCTTTGTCTGACTTTTCTCAAACATTTGACCAGATCATAGTCAATGTATGTAATTCAAGTagatgtgcaaaaaaataaaaactcttatATCTCTGGTG
>TCONS_00059096
CATTGAGTAAAGAGTTACACAAGAGCTGAGATGTCCACACCGAGAGTCCTCCCGCAAAGCAAAGAGACTCTTTTGCAGAACTACAACAAGAGACTCAAAGATGACATCAGGTCAATTCTAGACAATTTTAcggaaataattaaaactgctaAGGTGGAAGATGAGACTCAGGTTTCCAGGGCGACGCAAGCTGAACAGGACCATTTTGAAATGCATGTCCGAGCTGCCAACATTgtACGTGCAGGAGAGTCTCTGATGAAGCTTGTCTCAGACCTGAAGCAGTTCCTTATCCTGAATGATTTCCCGTCTGTCAACGAGGCCATCAGTCTGCGTAACCAGCAGCTCCGCACACTGCAGGAGGAGTGCGACAAGAAGCTCATCTCTTTGCGGGATGAGATTGCCATCGACCTGTATGAGCTCGAGGAAGAGTATTACTCCTCCAGCTGTGGACAATGGGATGGTGTTGAGTTGCCACTTTGTGAGGCCTTTCATCGGCAGGACAGTTGGGGGTCCCCTGAGATGACCTCTGACCCCTCAAATGCCAACCCTGAGGACTCAGACCACTTGGGATCCCAGGAGTCTATGCAACGTCACCGCAACGGCAGTGGCACTAGTGAGCAGTCATGA

Function

symbol description
med22 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED22 (mediator complex subunit 22).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040625-156 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED22 (mediator complex subunit 22).

Ensembl:

ensembl_id ENSDARG00000014148

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059094 False 1349 mRNA 0.38 4 33287611 33291719
TCONS_00059095 False 2059 mRNA 0.36 4 33287718 33292251
TCONS_00059096 True 627 mRNA 0.50 4 33289057 33294747

Neighbor

gene id symbol gene type direction distance location
XLOC_030218 surf1 coding upstream 3893 33281105 ~ 33283718 (+)
XLOC_030217 npffr2b coding upstream 183245 33067283 ~ 33104366 (+)
XLOC_030216 CR855258.1 coding upstream 293720 32993786 ~ 32993891 (+)
XLOC_030215 lmo4a coding upstream 325588 32924669 ~ 32962023 (+)
XLOC_030214 ccn1l1 coding upstream 367462 32914321 ~ 32920149 (+)
XLOC_030220 usp20 coding downstream 6258 33301005 ~ 33330923 (+)
XLOC_030221 NA coding downstream 37702 33332449 ~ 33338469 (+)
XLOC_030222 ptges coding downstream 45015 33339762 ~ 33347993 (+)
XLOC_030223 si:dkey-238j22.1 coding downstream 194113 33488860 ~ 33491935 (+)
XLOC_030224 ms4a17c.2 coding downstream 203506 33498253 ~ 33500331 (+)
XLOC_030213 CR925757.2 non-coding upstream 401013 32886472 ~ 32886598 (+)
XLOC_030212 CR925757.1 non-coding upstream 402280 32885205 ~ 32885331 (+)
XLOC_030208 CR376857.1 non-coding upstream 649846 32637648 ~ 32637765 (+)
XLOC_030206 NA non-coding upstream 920130 32358880 ~ 32367481 (+)
XLOC_030228 NA non-coding downstream 640872 33935619 ~ 33937420 (+)
XLOC_030229 NA non-coding downstream 998514 34293261 ~ 34295073 (+)
XLOC_030234 NA non-coding downstream 1348700 34643447 ~ 34797351 (+)
XLOC_030235 NA non-coding downstream 1426390 34721137 ~ 34731442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_07533234_07536497 MED22 coding CI01000339 null 7533234 ~ 7536733 (+)