XLOC_030217 (npffr2b)


Basic Information

Item Value
gene id XLOC_030217
gene name npffr2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33067283 ~ 33104366 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059089
atgAATGGCCAAAACATCTCAGTGAACCGTTCCACCTTTCGTCcaaattattatacaaatattaccTATGTGGACTTCTATCTACACGAGCCCTTTGTGTCCGCTATCTTCATTGTGTCCTACCTCCTCATCTTTATCGTGTGCATGATGGGCAACGGAGTGGTGTGCTTCATTGTGTTAAGGAGCAAGAACATGCGTACAGTCACTAATCTCTTTATTCTTAACCTGGCCATCAGTGACCTGCTGGTTGGCATCTTCTGCATGCCAACAACATTAGTGGACAACATTATCACAGGCTGGCCTTTTGGCAGTTTGGTGTGTAAGCTGAGTGGGATGGTGCAAGGAATATCAGTATCCGCATCAGTATTTACACTAGTGGCCATTGCTGTGGACAGATTCCGCTGCATTGTCTATCCCTTCAAACAGAAGCTCACCATCTCCACCTCcaccctcatcatcatcatcatctgggTTCTGGCCATCTCCATCATGTGTCCGTCAGGTGTAATGCTACAGGTCACCAAAGAGCACAGAGTCTCCATCCTGCTAAGCGATGGCAACACTACGCAGCCCTTCTACTGGTGTCGTGAAAACTGGCCCAACCAAGAGATGCGCAAGATCTACACCACGGTACTCTTCGCTAACATTTATTTGGCACCTCTAACCCTCATTGTCATAATGTACGCCCGGATTGGAATCACACTCTTCAAAACATCCATGCCGTGCAGATATGAAAGTCGCCAACTGGTGTCCCGGAAGAAGAAGCGGGTGATTAAAATGTTGCTGGTGGTCGCCCTGCTCTTCATCCTGTCTTGGCTGCCATTGTGGGCACTCATGATGCTGAGCGACTATGCGAGTTTGAGCGAGCGCCAGCATCGGGTCATTAATATCTATTTTTATCCTCTGGCCCACTGGCTGGCATTCTGTAATAGCAGCGTCAATCCTATAATATATGGCTTTTTCAATGAGAACTTTCGCAAAGGTTTCAAGGCAGCTTTTAAACTGCAGCTGTGCTCAGGGCATTCAGGCAATAGGAGGACTTACTCGCACCGACTGCAGGGCAATGCTGTTTTACCAGCCAATTTACCACTAACCAAGCAAACAGCACTGGAGACTGGAGCTCCCAGACCAGGACAAGGACTCATCCAGGGGCTGGTGTCTGTGAGCAATGGGAAGGGTTTGGGTGAAAGAAGCCAGTCTTCAGGGAAAGAGAACATGAAAGAACAGGATCTGATCATGGAAGATTTGGAGAAGGTATGTgtgtatgcctgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcttgcgtgcgtgcgtgtgtgtgtgtttag
>TCONS_00059090
aatattaccTATGTGGACTTCTATCTACACGAGCCCTTTGTGTCCGCTATCTTCATTGTGTCCTACCTCCTCATCTTTATCGTGTGCATGATGGGCAACGGAGTGGTGTGCTTCATTGTGTTAAGGAGCAAGAACATGCGTACAGTCACTAATCTCTTTATTCTTAACCTGGCCATCAGTGACCTGCTGGTTGGCATCTTCTGCATGCCAACAACATTAGTGGACAACATTATCACAGGCTGGCCTTTTGGCAGTTTGGTGTGTAAGCTGAGTGGGATGGTGCAAGGAATATCAGTATCCGCATCAGTATTTACACTAGTGGCCATTGCTGTGGACAGATTCCGCTGCATTGTCTATCCCTTCAAACAGAAGCTCACCATCTCCACCTCcaccctcatcatcatcatcatctgggTTCTGGCCATCTCCATCATGTGTCCGTCAGGTGTAATGCTACAGGTCACCAAAGAGCACAGAGTCTCCATCCTGCTAAGCGATGGCAACACTACGCAGCCCTTCTACTGGTGTCGTGAAAACTGGCCCAACCAAGAGATGCGCAAGATCTACACCACGGTACTCTTCGCTAACATTTATTTGGCACCTCTAACCCTCATTGTCATAATGTACGCCCGGATTGGAATCACACTCTTCAAAACATCCATGCCGGCCCCAGTGAGCCAAGTTGGCACCTCAGGCTCCGGTTCTGGCTCGGGGAAACAGTGCAGATATGAAAGTCGCCAACTGGTGTCCCGGAAGAAGAAGCGGGTGATTAAAATGTTGCTGGTGGTCGCCCTGCTCTTCATCCTGTCTTGGCTGCCATTGTGGGCACTCATGATGCTGAGCGACTATGCGAGTTTGAGCGAGCGCCAGCATCGGGTCATTAATATCTATTTTTATCCTCTGGCCCACTGGCTGGCATTCTGTAATAGCAGCGTCAATCCTATAATATATGGCTTTTTCAATGAGAACTTTCGCAAAGGTTTCAAGGCAGCTTTTAAACTGCAGCTG

Function

symbol description
npffr2b Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within several processes, including regulation of MAPK cascade; regulation of adenylate cyclase activity; and regulation of cAMP-dependent protein kinase activity. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000060702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059089 False 1332 mRNA 0.48 5 33067283 33104366
TCONS_00059090 True 1008 mRNA 0.49 3 33070608 33104045

Neighbor

gene id symbol gene type direction distance location
XLOC_030216 CR855258.1 coding upstream 73392 32993786 ~ 32993891 (+)
XLOC_030215 lmo4a coding upstream 105260 32924669 ~ 32962023 (+)
XLOC_030214 ccn1l1 coding upstream 147134 32914321 ~ 32920149 (+)
XLOC_030211 rpl12 coding upstream 180263 32882688 ~ 32887020 (+)
XLOC_030218 surf1 coding downstream 176739 33281105 ~ 33283718 (+)
XLOC_030219 med22 coding downstream 183245 33287611 ~ 33294747 (+)
XLOC_030220 usp20 coding downstream 196639 33301005 ~ 33330923 (+)
XLOC_030221 NA coding downstream 228083 33332449 ~ 33338469 (+)
XLOC_030222 ptges coding downstream 235396 33339762 ~ 33347993 (+)
XLOC_030213 CR925757.2 non-coding upstream 180685 32886472 ~ 32886598 (+)
XLOC_030212 CR925757.1 non-coding upstream 181952 32885205 ~ 32885331 (+)
XLOC_030208 CR376857.1 non-coding upstream 429518 32637648 ~ 32637765 (+)
XLOC_030206 NA non-coding upstream 699802 32358880 ~ 32367481 (+)
XLOC_030228 NA non-coding downstream 831253 33935619 ~ 33937420 (+)
XLOC_030229 NA non-coding downstream 1188895 34293261 ~ 34295073 (+)
XLOC_030234 NA non-coding downstream 1539081 34643447 ~ 34797351 (+)
XLOC_030235 NA non-coding downstream 1616771 34721137 ~ 34731442 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_07417547_07433615 NA coding CI01000339 null 7416918 ~ 7433802 (+)