RNA id: TCONS_00059089



Basic Information


Item Value
RNA id TCONS_00059089
length 1332
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_030217
representative False

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33067283 ~ 33104366 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


atgAATGGCCAAAACATCTCAGTGAACCGTTCCACCTTTCGTCcaaattattatacaaatattaccTATGTGGACTTCTATCTACACGAGCCCTTTGTGTCCGCTATCTTCATTGTGTCCTACCTCCTCATCTTTATCGTGTGCATGATGGGCAACGGAGTGGTGTGCTTCATTGTGTTAAGGAGCAAGAACATGCGTACAGTCACTAATCTCTTTATTCTTAACCTGGCCATCAGTGACCTGCTGGTTGGCATCTTCTGCATGCCAACAACATTAGTGGACAACATTATCACAGGCTGGCCTTTTGGCAGTTTGGTGTGTAAGCTGAGTGGGATGGTGCAAGGAATATCAGTATCCGCATCAGTATTTACACTAGTGGCCATTGCTGTGGACAGATTCCGCTGCATTGTCTATCCCTTCAAACAGAAGCTCACCATCTCCACCTCcaccctcatcatcatcatcatctgggTTCTGGCCATCTCCATCATGTGTCCGTCAGGTGTAATGCTACAGGTCACCAAAGAGCACAGAGTCTCCATCCTGCTAAGCGATGGCAACACTACGCAGCCCTTCTACTGGTGTCGTGAAAACTGGCCCAACCAAGAGATGCGCAAGATCTACACCACGGTACTCTTCGCTAACATTTATTTGGCACCTCTAACCCTCATTGTCATAATGTACGCCCGGATTGGAATCACACTCTTCAAAACATCCATGCCGTGCAGATATGAAAGTCGCCAACTGGTGTCCCGGAAGAAGAAGCGGGTGATTAAAATGTTGCTGGTGGTCGCCCTGCTCTTCATCCTGTCTTGGCTGCCATTGTGGGCACTCATGATGCTGAGCGACTATGCGAGTTTGAGCGAGCGCCAGCATCGGGTCATTAATATCTATTTTTATCCTCTGGCCCACTGGCTGGCATTCTGTAATAGCAGCGTCAATCCTATAATATATGGCTTTTTCAATGAGAACTTTCGCAAAGGTTTCAAGGCAGCTTTTAAACTGCAGCTGTGCTCAGGGCATTCAGGCAATAGGAGGACTTACTCGCACCGACTGCAGGGCAATGCTGTTTTACCAGCCAATTTACCACTAACCAAGCAAACAGCACTGGAGACTGGAGCTCCCAGACCAGGACAAGGACTCATCCAGGGGCTGGTGTCTGTGAGCAATGGGAAGGGTTTGGGTGAAAGAAGCCAGTCTTCAGGGAAAGAGAACATGAAAGAACAGGATCTGATCATGGAAGATTTGGAGAAGGTATGTgtgtatgcctgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcttgcgtgcgtgcgtgtgtgtgtgtttag

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000085821

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00059086 lncRNA upstream 134515 32928834 ~ 32932768 (+) False XLOC_030215
TCONS_00059079 lncRNA upstream 180875 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059076 lncRNA upstream 181212 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059073 lncRNA upstream 211187 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00061733 lncRNA upstream 699802 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059092 lncRNA downstream 176797 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061734 lncRNA downstream 176797 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00061735 lncRNA downstream 228083 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00059098 lncRNA downstream 228182 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00061736 lncRNA downstream 228182 33332548 ~ 33338469 (+) True XLOC_030221
TCONS_00059087 mRNA upstream 105260 32932357 ~ 32962023 (+) True XLOC_030215
TCONS_00059084 mRNA upstream 121028 32924669 ~ 32946255 (+) False XLOC_030215
TCONS_00059083 mRNA upstream 147134 32914321 ~ 32920149 (+) True XLOC_030214
TCONS_00059075 mRNA upstream 180263 32882688 ~ 32887020 (+) False XLOC_030211
TCONS_00059078 mRNA upstream 180474 32882820 ~ 32886809 (+) False XLOC_030211
TCONS_00059091 mRNA downstream 176739 33281105 ~ 33283718 (+) False XLOC_030218
TCONS_00059094 mRNA downstream 183245 33287611 ~ 33291719 (+) False XLOC_030219
TCONS_00059095 mRNA downstream 183352 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059096 mRNA downstream 184691 33289057 ~ 33294747 (+) True XLOC_030219
TCONS_00059097 mRNA downstream 196639 33301005 ~ 33330923 (+) True XLOC_030220
TCONS_00059088 other upstream 73392 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059085 other upstream 134515 32924918 ~ 32932768 (+) False XLOC_030215
TCONS_00059077 other upstream 180374 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059082 other upstream 180685 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059081 other upstream 181397 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059093 other downstream 177895 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059114 other downstream 1816029 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 2353868 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3401107 36505473 ~ 36506619 (+) True XLOC_030253
TCONS_00059140 other downstream 3494741 36599107 ~ 36609700 (+) False XLOC_030256

Expression Profile


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