RNA id: TCONS_00059084


Basic Information

Item Value
RNA id TCONS_00059084
length 1895
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_030215
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32924669 ~ 32962023 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAATTTCAGCGTAAACTGACGCCAGATACACGATTCTGCAGCTTGTAGGAGGTTTTAGGTTCTGTTAGGAAACGAGTGGTTATAATAAGTAGTTTAAAGGTAACATCACGAAGATAATGTGTAATAGCGCGACTCAAACGCGAGTTTGACGGTTGTGGTAAAGCACTTCTTCAAGCAAGAAGGACGATTCTGAAGTTTCTGGAACCGAGGCTCTCGGATTATCAAAAGCGCATTTTCTTCAACGGTTTTGGGGTGGATGAAAGCAAAACAAGTTTGAGGACAGCCACTTTATCACTGTTTGATACCTCACAGTAACTTCTGAAGTGATTCCAGCACCCCTTGACCTTCGAGATACGTACAAATAACGGCAGGCAATGGTGAACAGTCGTGTGGAAAGCTCCGCGGTTGCGGTAACAGGAGGCAGTGGTGGGGCCGTACGCTCCTGTGCTGGATGCGGTGGTCGGATATCGGACCGCTTTCTGCTCTTCTCTATGGATCGGTACTGGCACACGCGCTGCCTCAAGTGCTCCTGCTGCCAGGCTCAGCTGGGAGAGATCGGCAGCACCTGCTTCAGCAAAGGAGGGATGATCCTCTGCAGGAACGATTACATCAGGTTGTTTGGTCACAGTGGAGCTTGCAGTGCGTGTGGACAGTCTATTCCTGCCAGTGAGATGGTGATGAGGGCCCAGGGTAACGTCTACCATCTAAAGTGTTTTACCTGTGCCACTTGCCGAAATCGCTTGGTTCCTGGTGACAGATTTCACTATGTCAACGGCACCATTTTTTGTGAGCATGATCGACCAGGTGGAGCTTTGCTCAGTAGTCATCTGACCCCCCTGCAGAGCAACACCCTGCTGCCCGACCAAAAGGTGTGCTGAGGAAATCTGGATTTATTATTTGCGGTGTGCCTTCTCTTCAGTCCTTTCCTCACATCTTCCCTCCAATCTCTCCTCGTGAATGTCCACCTTCACCCGAGACCTTCTGCCCACTTCTGCGCATCCAGCCACCTTAAAAGAGTTCAGAACTACGCAAGTACTGTGAGTCACTTGTGAGACAATCACCCCTGACAAGGGAAAACGTAATCAAGTCGAAGAAAGACACGGAAGCTAAAAATAATCATACGCACTCCCTCAGATGCGGTCTGTGGTTATGGCTGGGATGCCCTGACCCTGAAAGCCTTAGACTCATTTTCAAGAGCAGCTCTTTAAAGCTGGGGTGATGCTCAACACCATTTTGTTCCCTTTTGAGAAGTTTCTCAAGAAATGTTGTGGACATCACCTGACATTTTGGACTACGGATGGTGATGGTTTTTACTTTATGCCCTCAAAACGACATCCATATATCAAAAGACTTTTTCAGTGGTTGTTGCTTTTGTTTACAGGCCCTTTTCACTCTAAGTGTAAGTTTATTCCTTCCTTTTTTTGAACATGTTCTGTCGTCTTTGGTgcctaaaaacatttttacttccGGTTTTCCCTCCATTGTCATTTACTTCCTATTAGCAAGTAATCGTACACATGCACAGTACAGATACGTGAACATGTATTGTTTTGTCTACTCGAGTTTAAGACATACGAAGAGCTCTTTTTGAAAGAgttggtctcatgaggaaacggcatgtttttttttttcctccccctGAATGGTTTGGTagaataaataaatctgtatgcATATTCTCTAATAGAGACTGCTATTCAGTGTCTGCCAAGACTTTTGAGAGTATGAAGGAGATGGAGAGTAAAATTGTACATATTTCATGTGctgttgtgtgttgtgttcagtggTTGACCTGTTTCCTTGTGTCCCCTGTTCAAAAAGAGGGACGTTCAAAAGTAAGATAtctgtaaaggaaaaaaaaagtacttaattaaataattataaccaTCAAAAA

Function

GO:

id name namespace
GO:0031076 embryonic camera-type eye development biological_process
GO:0030900 forebrain development biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010702-1 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye development and forebrain development. Is expressed in several structures, including brain; cardiovascular system; germ ring; mesoderm; and neural keel. Orthologous to human LMO4 (LIM domain only 4).

Ensembl:

ensembl_id ENSDART00000085219

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059079 lncRNA upstream 38261 32883593 ~ 32886408 (+) False XLOC_030211
TCONS_00059076 lncRNA upstream 38598 32882700 ~ 32886071 (+) False XLOC_030211
TCONS_00059073 lncRNA upstream 68573 32850839 ~ 32856096 (+) False XLOC_030210
TCONS_00061733 lncRNA upstream 557188 32358880 ~ 32367481 (+) True XLOC_030206
TCONS_00059058 lncRNA upstream 660609 32260163 ~ 32264060 (+) True XLOC_030204
TCONS_00059092 lncRNA downstream 334908 33281163 ~ 33282835 (+) False XLOC_030218
TCONS_00061734 lncRNA downstream 334908 33281163 ~ 33282875 (+) False XLOC_030218
TCONS_00061735 lncRNA downstream 386194 33332449 ~ 33338469 (+) False XLOC_030221
TCONS_00059098 lncRNA downstream 386293 33332548 ~ 33338466 (+) False XLOC_030221
TCONS_00061736 lncRNA downstream 386293 33332548 ~ 33338469 (+) True XLOC_030221
TCONS_00059083 mRNA upstream 4520 32914321 ~ 32920149 (+) True XLOC_030214
TCONS_00059075 mRNA upstream 37649 32882688 ~ 32887020 (+) False XLOC_030211
TCONS_00059078 mRNA upstream 37860 32882820 ~ 32886809 (+) False XLOC_030211
TCONS_00059070 mRNA upstream 64969 32835219 ~ 32859700 (+) False XLOC_030210
TCONS_00059069 mRNA upstream 65950 32835219 ~ 32858719 (+) False XLOC_030210
TCONS_00059089 mRNA downstream 121028 33067283 ~ 33104366 (+) False XLOC_030217
TCONS_00059090 mRNA downstream 124353 33070608 ~ 33104045 (+) True XLOC_030217
TCONS_00059091 mRNA downstream 334850 33281105 ~ 33283718 (+) False XLOC_030218
TCONS_00059094 mRNA downstream 341356 33287611 ~ 33291719 (+) False XLOC_030219
TCONS_00059095 mRNA downstream 341463 33287718 ~ 33292251 (+) False XLOC_030219
TCONS_00059077 other upstream 37760 32882707 ~ 32886909 (+) False XLOC_030211
TCONS_00059082 other upstream 38071 32886472 ~ 32886598 (+) True XLOC_030213
TCONS_00059081 other upstream 38783 32885760 ~ 32885886 (+) True XLOC_030211
TCONS_00059080 other upstream 39338 32885205 ~ 32885331 (+) True XLOC_030212
TCONS_00059074 other upstream 65415 32858428 ~ 32859254 (+) True XLOC_030210
TCONS_00059088 other downstream 47531 32993786 ~ 32993891 (+) True XLOC_030216
TCONS_00059093 other downstream 336006 33282261 ~ 33282875 (+) True XLOC_030218
TCONS_00059114 other downstream 1974140 34920395 ~ 34921911 (+) True XLOC_030237
TCONS_00059121 other downstream 2511979 35458234 ~ 35461749 (+) False XLOC_030242
TCONS_00059135 other downstream 3559218 36505473 ~ 36506619 (+) True XLOC_030253

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000339_07331830_07342029.mRNA False 756 mRNA 0.39 3 CI01000339 7331553 ~ 7342208 (-)